RNA id: AMCG00002373


Basic Information

Item Value
RNA id AMCG00002373
length 8517
RNA type mRNA
GC content 0.43
exon number 19
gene id AMCG00002373
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12082111 ~ 12096642 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGGGCGATCTGTATCAGGGCTCAACCACAAACTGGCAGAATGTGACACTGAAAACCTGACAAAGGAATGCAATGACAGATGGAGGGGTGCTGAAGGGGAATGAAGCACAGTAAatatggggagagagaaaggatgAAGAGGGGAGAGTGATAAAGGAGGGCAAGGAGAAAGGCATTGGATTTTCCACTGTGGATGGAGCAGGAAAGAGGAAGCCCTTTATTAACAGAAGCAGTTTGCAATATTAAGCCTGTTCTTTTGCAGTGAATCCGTTTGTGCAGACTTCCCTGACTTCAATGAGGCGAGAGTAACGAGCTGGGGCAGGTTGGGATGGTGTCCTGAAGACCTGTGTCGTTGTGGTCGCGAGTCTGGTGTCGGGAGCTGTCTTTCTTTCCAGCCTCCCAGTGCAGCAGGGCCAACACGGGCCTGGCTACCTGGGAGTCTGACCCGTGTCTGTGCACTGGGCTGGGGTCCGGGCCCGGAGATGTACGCCTTCTACTCTCTGCTCGTCTATATCTTCTACACGCTCTTCAAGAGGGAGGAGTCTGCGCAGGAAGAAGAAGGACCTTCTACACAGGAACCAGACATTGTCTCTGTGAGAACAAAGAGCTTGAGGGGGAAAAATGCCCCCCCACCAAGCATGCGAGAAGATGGCTGTAAAGGGCTGGAATACTCTGAGGGCAGCAGCTCTGACAGTGATGGCCTTTCTCTCAGTGAGGAAGACGAGTGTGACGACGAAGACCTGGAGGACAGTGCAGTCTCCCCCCTGGCTGCTTTCCTGTCCTTTAAACAGGAAGCTGAAGGAAGAAGAGTTTCACAGGCCCAGGCCGAAGCCAGCAGTGGAAAGGCAGCCGAGTCCCCGCTGCTGACGGTGATGTCCCACCTCCTGACCTTCTTGGAGCAGCATGCCCACATGACGCAGCTGCAGCAGCGTGCGCAACAGTACCGGGTCAGGCTGCAGCGGCACCGGGCCCAGCACCGCCGGCAGCTGCAGACCCTGAAAGCCTCCTACCGCCAGCGGCTGAGGGACCAGAGTCGAGTGATCGGGAGCCTGGAGGGGGTGATCACCGACCAGCAGGACCGGCTGAGCAGCATGCCGTCTGGTGGCCCCACCATGCCCCACCCGCCCCAAGACAGCCTTCACCAGCTGGTGCAGTCCCTGCGCAGTCTGCAGGGGGAGAAGAGCCGCATGCAGGGGGAGCTGCAGCGCCTGCACTCACAGCTGCAGCAGAGGGAGCAGGACAAGCAGCACACCACAAAGGACTTCCAGCAGCAGATTGAAGACTTGCAGCGCTGCATCGAGGAGCGTGAAGGTGAGCTGACACGGCTCAGGACAGAAACAGGAGTGACAGATTCTGAGAAGAGGATGTTCCGCTTGGCAGCTGAGAACGACAGTCTGAAGGAGAGTCTCAGCGTCACCCAGagcctcctgcagcagctgtccCTCGTGCCGTCTCAGTCCAGCACTGCGCTGATCAAGGAAAACGAGTCCCTGCGGAGCCGGGTCCTGCAGCTGGAGAGCTCCCTGCAGCATCGCGCAGAGCAGCTGTCCCGGCTGGAGAGAGACAGCGAACAGGCCgagtggaggaggagggacGAGATGTGCAGGCGGGATGACAGAGTGAGGCAGCTACAGCTGGATCTGGACAAGGAGAGGGGCCGGGAACCAGTGGTAAAGTACGTCACTAAGACGGTGGAAGTGGAGTCACCCGGGACTCTGAGGCTGTTGGCTGAGACGAGGGACATGAATAAGCGATTGGCTGAGGAGCTGTCCATTCAGAGCCAGAAATGCAGCCGCCTGGAGGAACAGATCAGGGCGTCAGAGGAAGTGACTGCTGGTCTGACGAAAAAgATTGTTGCCTATGAGTCTGAAATCGAGAAGCTAAGGGAGGACCTGCTGAAGGAGATCGGCCACCTGGAGGGAAGaaaggaggaggcagtgagAGAGGCGGCCGAGTGCTCCGAGCAGCACCTGCAGCACCTGAGGGAGCAGTTCACAGGTCTACAGAGCCGCCTGTCTGCCCTCCAGCCCGCTCTGCGCTCAGTGCAGGCCGACTACGGCAGTCTGCGCAGCCAGGTGCGCAGCTTTTCTGAGTTCTACGGGGCAGCAGTCAACGAAGCCAAGAAACAGTTATGTTCTGCAATCAGTGAGATGTCTGAGGCCAACAGAGACATcctacagaaatacagaaaggaaGTGGCTCTGCGCAGGAAGTACCATGAGCGACTGGTTGAACTTAAAGGCAACATCCGGGTCCTATGCCGTGTGAAGCCCGTCCTGTCTGAGGATCAGCAGGAAGAAGGACAAACCACAGCTGTGACAACCGACCCCAACAACGAATCCGCAGTGACCGTGCGGAGCAAAGGACGGGCGCGAGAGTTTGAGCTGGACAAAGTGTTTCAGCCTCAGGCTTCTCAGGATGAGgtTTTCCAGGAGATTGAACCCCTCGTGACTTCCTGCATTGATGGCtacaatgtgtgcatttttgCCTATGGACAGACTGGCTCTGGTAAAACCTACACTATGGAGGGAAGTGTTGAAAACCCTGGGATAAACCAAAGGGCTCTGAAGCACCTTTTCAGTGAGATGGAGGACAGGAAGGGGATGTGGGACTATGCTGTGACCCTCAGTTTAGTGGAGATCTACAACGAAGTGCTCAGAGATCTGCTCAGCAAGGATCCCGGGGAGAAGCTGGACATCAAGATCAGTCCTGACGGGACCGGGCAGCTCCATGTTCCTGGGCTGAGGGTCATTGAGGTCAAGAGCTTCCAGCACATCAAGAAAATTCTGGCTCTGGGTCGGAAGAACAGGATCACTTACAGCACCCAGATGAACCAGCACAGCTCTCGCTCACACGCCTTGCTCACCATCACAGTGACCGGCACTGACCTGGCCAGTGGAGCAAAGACTATAGGTAAGCTGAACTTAGTGGACCTGGCGGGTTCTGAGCGCGTGTGGAAGTCCGGGGCCGAAGGGGAGCGGCTGAAGGAGGCTCAGAACATTAATCTCTCCCTGCTGGCTCTGGGGGACGTCATCCAGGCATTGAGGGGCCGGCAGACCCACGTTCCCTTCAGGAACTCCAGGCTGACCTACTTGCTGCAAGACTCGCTGGGAAAGGGAAACAAGACTGCGATGGTAGTGCAGatCTCCTCGTTGGAGAGGAACGTGGGTGAGACCTTGTGCTCTCTGAAGTTTGCACAGAGAGTGTGTAAAGTGGAGCTGGGCCCTGCGTCACGTAAGATTGAGTCTGCAGGACACTGTGACTTTCTCTCTTAATCTGGTGACAGAGAAAGAGGGCAGAAGACGATTTCAAAAGTCAGTGACTCAACCCACTCCTCCAATTAAAGGGCTGAGTTTAGACGGGTCACTATAATGTGACTAGGATTTCAATCTTATTCTTACCATTTTCCAAacatattcaaatttaaatccAGAAATAGTGCCTGCAGCTCTTGGCTTGGCTTGGCTTGGGCAGATCTGCATGctaaacatttttcttcaacACACCTATGATGCTGTCTGTGACACGCCACTGGTTTTAAAGTTATCATTGGTATTATTACTAGACActcaaaatgttatttgaagAATTTcctaaacattaaaacaaaatatactccAGAGTATATAATTGGCTCTGTTCTTGAGATTGGCTTTGGATGGTGTGACAGACTTAAAACAGGATCCATGAAGTGGATATTTCTAATGTTAAACAGACACGTGTGCTTAATGTTCAATTAATACTGAAACAGAGATCCTGAAATAGGAGGAAGGCCAAATCTTCTCAATCCATTTTATTGACTGTAACTAACTAACAGAGGTGACTTCTGAACAAGCTGAACtaatttatttacacttttgttGTCTAGATGATTAGCATATTTGTGATCAGTCTCATCACCTTTCAGATTCAGAGCTTTGTTTAGCATGGGTGGTTACAAGTAAGATggactgtaatttatttaaccTGACAGatcaaacatgaaaacatgaattgATTCAGTAAAAgtgaattatacaaataattcatGTATATCAATGGGATTTCTGTTGATATAAGGGTGCATTAAACTGACTCAGGTAATTACAGAACTTAGCCTTACATCTGTTACTTGCAAAGTTGAGATTACGTCACTTTACACTACAAACATAAAGCCCAAACGCTTCATTTTATGCTGGAGTTCAGTTGCTAAATTTGCTGTGTTAAAGTCAACACGGGTTTGAAATTTGGCTGAACAAATTCAGTGATTTACATCCTGTCCTGTGAAGGAAATATTGATTAGATACGTGTAGCTgaagacaataataaataatctttaATAATCCTAACaggattttacataattggaatacatagaaaataatgtatttgattgacataaaacaataacacagcCACTCTATATAATTAACAATTTGATCTGTTCCGTACCTGCACGTGACTGTGGCATATAGACATGGAGAAGAGGGATGTGAAAACCATTGAGACTGACATGGTAATTTCAACATACAAACAGCAGCAAAACTGTGGGccataaaaacacagcaaaaaataattaatttatggGATTAATATTAACACTTTGCATGCTGGTTCTGAGAAAATGCACGGCCACAAGATTGCACTGCACCCAAAGGTCCTGATTATACTATTTTCAATTGCTCCTATTTTCGGTGAAATATCTTCTACTGACTTTTCTgctattaaaatacagaacttTCCTGTCCCTCTTcagttttacagtgttttgACTGTTGCCAGAAATGAGGTGTTACACTGCACTGAAGATTGCTCTTGTAAATAGGCCATGTTGGTTTAATGGTGGTTGTGTGCATCGTCTGATCCCCAGCATTCCTTCAGCTGAGCCATTTAAATGTCATTCAGCTCTGATCTGGAATTCAGAGGAGATTGTGCTTGTTATGTTATTTTCAGAACAGACAATGTGCTCTATGTTCTTatccaaaattatatattagtaGAACTATGTGCttaatgacatttttgtttttcatatctatttcattgttatttttttcagtaacGTCCTATAGATTATTCAATAATagtggattaaaataaatggattgtTCTTGAAAATATTCTATTCATTAATACTGTTGTACtattattcaattacatttaaagatgcAAACATATCCCAAACCCTTTTAGCTGGCCTAAAAACCTCTGATTGCACTGGCTGACAAAGCAGGCAATGCTTTACAATAGAAGCAACTGTCCATTGTCCATACCACTGAGTatgtggaaataaatatgtattagtgCTTAATCTGATAGGACATGTACTTCTTGAGTAGACATGGATATATACTATGCATGCAGTTATTTTAACAAATCTAAaagcatatactgtatactatagcatacttttgcattttttttataaatgaaattGCTATAgagttttgttatgtttttttgtgggggggagggtgtCATGAGGTTGAAGAATAAGAGAAACTGAGTATATAATGGGTGCTGAAAATAGATTTTCTGGGCTgctcaattattttaatgtttactttgtttaaagGCTGggacacatatttgttttttgtagtatAAGACagctaattaactaattagtgAACCAATGGAATGGAGACGCATTGTGTGAAATGTTCATCACCCATGTGAACAATTCCTATAAAAACACCGCAGAGGGGAACTATCCCAGTCCCGCCTAGTCGGTTTAGTGTGTTAGTAGCAGTGTATAAGTAAAATATCTGTGATTTTCCTGTTCCATTCtatcattttagtaattttaaAACTTATAATTGTAACCTACATTGTAATCGTGACTCCTGTCAATAACCCAAAGGAAAACTCTTTGGTGTTTCAGGAAGTGACGTTTCAGCAGAAAAGTCTACTTCTTCAAGAGCAAGGGATTGTCTTACCCCTGCAGCTGGGGCTAGTTCAGTGGCACAGCGAGCATATGGCTCTGTGTTCACTGGGACACTTTGAGATTGAAAGTAGCCTTTAAAAGAGATTAACATTTTAATCTGGCATTATTTACACCATTAACAAGTGGAGTCCCACTGCACTGcaataaacacatcaaataaagGCTCATAATACATCCATATGTGTCTCGTTTGCCGTTACTAATATGACAAAGTTCCTGTTTATCTTgggttaatgaaaaatacattttaataatgctgaatgtaatatttaatgaattaattgtgCCTGATCTGGCCACTGCACACATTAGGAATGtaatactgcactgtatttgaCTTGTTTTGTTAGGACCTACATGCCTATTGTATATtggtgtatattgtattttgcatttattgtaatttactgtattatgCAAATCTTTTGAGAagtgtattttgtgacaacAGCAGGTCGCCCTGGCTAATGGCGtctgcaaaataaagaaacaaaggcAAGTTCTCTCCTCATCACATAAGTAGAGTTGTACCAGTGATAGTGAACCACAGATTGCTGTTGGATGGGCTATGAAATTAAGCACCAAAACAAAGCTcaagatatatgtgtgtgtgtgttgtgtgtgtttttgagggAGTCAGTTCTGAAAAGCATTGGATAGAATGTTTctccattttattaaaacatttgaaatcccCAAAAtgctatacatacatacatacatcatgtttttaacacatattataggTATATATTGTAAGTACTgtgttacaaaatattatttataagtaCTTTAAATAACCTTCAAGTATCTTTTACTGCTACAGGCTGATCTCTCATTTGGCGGCATTGGTCTTATACTAAGGATTCctcatgtaaaaaaatatggTAAAGTGCTCAATTCCTGTAACAGTCCAAAACACtctaaatcaaatttaaacagATGTAATCTAACATGAAGCTGCTTTACATTCATTTAAGAACAAAACAGGATTTAAAACTACCAATGTTGAAGTTATCCCCCTTTTATGACCTTGCTTTGTGAGCAATACAATCTTCATATTATGGGCAAACAACTCTCACAGTGCAATTCCTTTTAGATCTTAATAAAAACTGGcatataaaaagctttttacaGTGAATACTGTTGCACAATTTCCACAAAAGATGAAAACATTCCTGGTGGAAAAGATCCAAggtgtattttgaaaatgttgtcctgtgagttttgtttaatttgacagATCAGCCCGTTTCAACAAagaataattgtattgtgttacaaacaataaaaatgtaaaatgatttaaatggaaaaggATAGGTTTTGTTTATCAACACATTCAATAATACATGCTCTTTATAACCAATTCTGAAAGCTAAAATATGTTGAAATTGATATATGGCAACTGGTTACctttaaacaacaaaatggAACATCCAATCAATTTTTGCAACTGCTTATTAAGATATAGCCTTAATGATGTCATCCTATAAACattaaaaggtaaaaaatatattatttaatttagtattgaatgctttaatttctgtttcATCCTATTCCATTTGTGACCCCAGTCGAACCTGAACTCGAACTCCATACAGGTAACAAATGAAACGCATACCAAGGAATGTCATTAACAATGCAATCCTGAGAAAGATTTCTAAACATTCATTCCATCTCTGAATATCAGATCGAAAGAAAACAGTGAAGAGATTTTGTGTGATGTACAGAGTgagactgttttgtttgttaaatataaaaatctttCCTTAAACAAATTAGTTGCTCCTGTGGGGCTTTGAGGAAGACCGGCTGGTTCAATACTGTAAATCAAAGCACATTTGTGATGGCAAACATTTAaagcagaggttcccaaacctCTTGGCTTTTCCCGCACCTCCCATTTGAGTCACAGCTCATGTTTGTTAAGTGTTGGAGACATCTCCAACAGCACTTTGATGTCTGGTGATAATTTGGACACACTCTCAAAAGAACAATAGTCTAGTAAtaattgttttctgctttttcttggCCTCTGGTCATGGAGGCCATGCTGCTTTACTTGCTGAACCGTTTGTTGAAGGAAAAGCTGCGCTCAGGGTCCTGTCCTTGGACAGGTCAAGGAGTCCTGTAGATCAGATTTTTCACCCCTTCATCTTTTtaccacagtttgggaaccgcTGATCTAAATGATTGCACATATGTTTTAATCGCACTGTTTCTGTGCAATAACCCAACCGATTCCTTATTGACTATGAGTAGTAAAGAGACTCTCTACGACCTCACACCTTTTCCAAATCACACCCTACCCTGACGGTAATAAGGCTGCACCTGTTTTATTGGCAAAACTGATATTCAGATTACTGCAGAGACTAAGCATTTGGCATCTTCAGAGcctttaacaaaaccaaaagtcTGAAATTTATAACAAGACAGTGGAAAACTGCTATTTTCTATATTATATTAGTGGTAGAATTACATGTAATGTCCTGTTGTAGTTATACTTCATGAGagaattacaatttaatatattaagatatattgaaattgaaaaggaCGTTTCTAGAacattttggaagaaaa

Function

GO: NA

KEGG:

id description
K10406 KIFC2_3; kinesin family member C2/C3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 37092 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 210732 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 218055 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 222786 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 233919 11847081 ~ 11848192 (-) True G122633
TU153975 lncRNA upstream 99278 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 145479 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 904199 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 955384 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 970579 13067221 ~ 13067627 (-) True G122877
AMCG00002367 mRNA downstream 21559 12055641 ~ 12060552 (-) True AMCG00002367
AMCG00002368 mRNA downstream 75759 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002359 mRNA downstream 164011 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002358 mRNA downstream 169096 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002357 mRNA downstream 189412 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002377 mRNA upstream 2682 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002375 mRNA upstream 27556 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002376 mRNA upstream 43363 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002374 mRNA upstream 48504 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002382 mRNA upstream 88392 12185034 ~ 12203026 (-) True AMCG00002382
TU153859 other downstream 75760 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 209249 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 227220 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 347787 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 397022 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 931555 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 931555 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1552586 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2844618 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4739514 16836156 ~ 16839722 (-) True G123585

Expression Profile