RNA id: AMCG00002376


Basic Information

Item Value
RNA id AMCG00002376
length 1435
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00002376
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12140005 ~ 12142344 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTTTTTCAAATCAAGCGCGACCGACGCGAGTAGTTTGTCCCTCTCCGGCTGTGTTAGATGTAGTCGCGGTGCCAGTGCGCAGGACAGGGCGATGTAAACAACGTGGGGAGACACACAAACAGCGAGCAGGTCAGCCAGTCCGACACCAAACTGCAGTATAATCCGAACCGAGCGGTGCTGAGGACCCTGATGCGCAGGAGGTATTCCCAGCACCCGAGTCGTGAAAAGGTATCGAGGGAAAATCTGAACATCTGCAGTACTCCTGCAAGCTACTCCTGCCATGTTTCCAGAGCTCAACAGCATCCTGAACACCAGCCCTGAACACTGCCCACggGGGGAGTTTGTCCTGGTGTCAGACAGACAGGCGGATGCATCTTTCCtcatccatcactttctgtccttCTACCTGAGAGCGGGCTGCAAGGTGTGCTTCCTGGGCCTGGTGCAGTCCTTCAGTCACTACAGCgcggtgggccagaggctgggcgTGAACCTGGTGCAGGCGAGGGACAGGGGTCAGCTGGTGTTTCTGGAGGGGCTGAAAGACTCACTGGGCACCCTGCTGCAGGAGGAGCCCGGCCCACACGCCAACACCCTGGACTTCCTCAGCTCCCCGAGGCCAGAGCTGCGCCAGCTGTTTGAGTTTGTGCAGAGATCAGTGTCCCCGGGGCCAGGGGAAGAGGGGGCCGGCCCAGTGCTCATCGTGGACGACCTGAGTGTGCTGCTCAGCCTGGGACTCAGCCCCTCGGCCCTCACGGACTTCAGCCACTACTGCAGGGCCGCGGTCTGCACCGAACTGCAGGGCAGCGTAGTGGTGCTGGTGCGCActgcggaggaggaggaggaagaggaggataaAGGCTCTGGATTACTGCTGGCTGGCCTTTCTCACCACAGCAGCCTGGAGCTGCGAGTGCAGGGCCTGAACACCGGCCACTGCAGGGACATCCACGGACAGCTGGAGCTGTGTTGGCGGAGGGGCAGCAGTGCCAGTGGGCCAGCAGAGCGGCGGCGGGTCCTGCAGTACAAGATCCAGGACAGGGGCGTGTCTTTCTTCGCCAGGGGCACCTCCAGCGCCGTGTTGTGACCCTCCCACTCTGACCCCCTGGCTCcccaacacacccacacatgcaCCTCAACACAGTGGAACCCAAATGCCGTGGGTCTCCCAGGGGTCGGAGCACAAGTCAGGGCACAGGGACACAGGAGGACTGCAACAAGAGAAGGTCATTTTGATGAGTGACCTCAGCGCTTCACCCGCAGTGTGATATCCTCGAGTCGCCCCCAGCCCGAGCCAGAAGAGTCTGAGAGAGTGCTTTCCTCCGTCACGTAGCACGCTCTGCTTTTGGGCACCAGACTTGCCGtgagagagatgcacaggatTGGATGGGATtggaaactgtaaaaataaacaaataaactgtaaaaagtCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0033588 elongator holoenzyme complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 94986 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 268626 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 275949 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 280680 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 291813 11847081 ~ 11848192 (-) True G122633
TU153975 lncRNA upstream 53576 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 99777 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 858497 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 909682 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 924877 13067221 ~ 13067627 (-) True G122877
AMCG00002375 mRNA downstream 249 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002377 mRNA downstream 39085 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002373 mRNA downstream 43363 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002367 mRNA downstream 79453 12055641 ~ 12060552 (-) True AMCG00002367
AMCG00002368 mRNA downstream 133653 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002374 mRNA upstream 2802 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002382 mRNA upstream 42690 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002384 mRNA upstream 105803 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002383 mRNA upstream 108948 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002385 mRNA upstream 341550 12483894 ~ 12504026 (-) True AMCG00002385
TU153859 other downstream 133654 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 267143 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 285114 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 405681 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 454916 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 885853 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 885853 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1506884 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2798916 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4693812 16836156 ~ 16839722 (-) True G123585

Expression Profile