RNA id: AMCG00002379


Basic Information

Item Value
RNA id AMCG00002379
length 4182
RNA type mRNA
GC content 0.57
exon number 26
gene id AMCG00002379
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12226849 ~ 12241355 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGCAGTGTCTGTCCTGTGAGTGTATAAGAGTCGTGGTCGAAAaaagaggcagagaaagagaaggagagaaagagagatagaatGAACTCCAAGATGACCTCTATAGACAGTGCTGTCCCAGGCCAGAACGGGACCCTTGGCCCCAGGAACTGCACCCAACTGAGGGAAAACGGTACCGCAGGTTCCTCTGCATCAGACTGCTCGCCCTCCCTCTGCAAGGAGATGGCTTGTGGAGGGCGCCGGTGTCTGGGCTCCATCATGTACCCCTCAACAATGGTGCGCCGCTCTCCCGAACACCCCCCAGACCAGGTCAGCCTACTGGACCAAGCCACAGACTTCATAAACCACTACTACACCTCCATAAaacgCTCCCAGTCCGAGGCTCACCAGCAGCGGCTCAGCGTGGTGCAGAGGGAGATCATCACAACTGGGTCCTATCAGCTGGAGGAGACAGAGCTGATCTTCGGGGCCAAACAGGCCTGGAGGAACGCGCCCCGCTGCGTGGGGCGCATCCAGTGGTCTAAACTACAgGTGTTTGACGCTCGAGACTGCTCCTCAGCTGCGGAGATGTTCACCCACATCTGCAATCACATCAAGTACGCCACCAACAAGGGCAACCTCAGGTCTGCCATCACGGTGTTCCCTCAGAGGTCACAGGGTCACGGGGATTTCCGAGTGTGGAACCCCCAGCTGATTCGATACGCCGGCTACAGACAGCCGGACGGCTCCATCATCGGGGACCCCTCTAATGTGGAGCTCACCGAGCTGTGCGTACAGATGGGCTGGCGGCCAAGAGGGGGGCGTTTTGACGTGCtgcccctgatcctgcaggccCGTGGGGAGCCCCCCCAGATCTTCAGTCTGCCCCCTGAGCTGGTTTTGGAGGTGCCCATCACACACCCCACGCTGCCCTGGTTTGCAGAGCTGAATCTGCGGTGGTATGGCCTCCCTGCCGTGGCTAACATGCTGCTGGAGATCGGTGGGTTGGAGTTCACTGCTACACCCTTCAACGGCTGGTACATGGGCTCCGAGATCGGCGTCAGAAACTTCTGTGACAACTACAGATACAACATCCTGGAGgAGGTGGGGCGGCGCATGGGTCTGGACACCAGGAAGACCTCGTCTCTGTGGAAGGACAAAGCCATGGTGGAGATCAACATTGCAGTGCTGCACAGTTACCAGcAGGCAAAGGTGACCATAGTGGATCACCATGCGGCCACCGAGTCCTTCATGAAGCACTTGGACAATGAGTACCGTGCGCGAGGAGGCTGCCCGGCTGACTGGGTGTGGATTGTCCCTCCGCTGTCCGGCAGCCTGACCCCTGTCTTCCACCAGGAGATGCTCAGCTACATGCTGTCGCCCACCTTCCTGTACCAGCCAGACCCCTGGAACCTGCCCGGATTCAGTGCAAAGAAGAAGATCACCTTCAAAGAGGTTGCAGAGGCTGTGAAGTTCTCCGCTTCCCTGATGGGCCACGCCATGGCACGGAGGGTGAAGGCGCGGATCCTGTACGCCACGGAGACGGGGCGCTCGCAGACCTATGCGAACATGCTCAGGGACATCTTCAAACGAGCCTTCGCCCCTACGGTGGTGTGTATGGATGACTACGACATCGTGAACCTGCAGCATGAGAACCTCGTCCTGGTGGTGACCAGCACCTTTGGAAATGGAGACCCTCCTGAGAATGGAGAGGTAACTGCCCACCCCATTACCGTCAAGCTTTATGTGTGTGAGATGTTCTCCAAAGCCCTGATGGAGATGTCACACCCCAGCTCGTCCGAGTCTCAGCAGAGGAGGAGCTACAAGGTTCGTTTTAACAGCCTGTCCAAGATGGATGACATTCTGGAGCACTTGAAGAGAGGACCTCGGCTGTCCAGCAACACGGAGAGTGCAGGACCACTGGGGACCATGAGGTTCTCTGTGTTCGGATTGGGCTCACGGGCGTACCCGCACTTCTGCGCCTTTGCCCACGCGGTAGACACACGCTTCGAGGAGCTGGGGGGCGAGCGCATCCTGGAGATGGGGGAGGGCGACGAGCTGTGTGGCCAGGAGGAGTCCTTCAGGAATTGGGCCAAGGGTGTGTTCAAGGCGGCCTGCGAGACGTTCTGTGTGGGGGAGGAGtctgagctggaggaggaggaggatgtgTTCTCCAGCGAATGGCAGCCCCACACCTACAGGACCGTCATCAGGGCCACGCCTACCACCATAGTCACTGCTCTCTCCCAGCTGCACAAGAAGAAGGTGTTTGAAGCAAAGGTCATCTCTACACACAACCTGCAGTGTGACAAGTCCAGTCGTGCCACAGTGCTGGTGAAGCTGGACTCTGGGGGTCAGAGGGAACTGCAGTACCAACCTGGTGACCACCTGGGCATCTACCCCACCAACCCCCAGGGTGTGGTGCAGGCGGTGCTGGCCCGAGTGTGCGACCCACCGCCCGTTAATGACACCGTCACCACAGAGAGCCAGAAGGAGAGGAATGGTAACCACAGCATGCCTCTGGTCTGGAGTGTCTGGGTGGAGGATGGAAGGCTGCCCCCCTGCACCTTCATGCAGGCCCTGTCCCACCTGCTGGACCTCAGCAGCCCCCCAGCGCCACCCCTGCTGCGGCTCCTGTCCCAGCTGGCCACGGACCAGCAGGAGCGTTTGCGCCTGGAGACACTCAGCCAGGCAGGGGAGCAGTACGAGTCGTGGCGCTGGGAGCACATGCCCACGATGGCGGAGGTGCTGGAGGAGTTCCCCTCCGTCAGCCTGCCCTCTTCCCTGGTGCTCAGCCAGCTGCCCCTGCTACAGCCGCGCTACTACTCCATTAGCTCCTCCCCCCTGGCCTGCCCCGGCGAGATCCACGCCACCGTGGCAGTGGTGCAGTACCGCACACAGGGTGGACAGGGACCCTTGCACTATGGCATCTGTTCCAACTGGCTGAACCAGATCCAGTCAGGCCAGCCGGTGCCGTGCTTCATCAGAGGGGCCCCTTCATTCCGCTTGCCCTCGGATGACTCCACCCCTTGCATCCTGGTGGGACCCGGAACTGGCATCGCCCCCTTCAGGAGCTTCTGGCAACAGCGGCTCTATGAGATGGAGCAGCTGGGCAGGAGACCGCGGGGCTTGGTGCTGGTGTTCGGCTGTCGGCAGGCTGAGTTTGACCACATTTAcaaggaggaggtggaggatgCCCAGAGGAGGGGGGCGATCAGTGCTGTCTACACTGCTTACTCCCGGGAGCAGAGCATTCCCAAGACGTATGTGCAGGACTTGCTGAGGCAGCAGCTGGTGGACACAGTCTGTGAGGCGATGGGCCCAGGCGGGGGGCACATGTTCGTGTGCGGCGACGTCACCATGGCCAGGGATGTGCTGGCCACTGTGCAGGACATCTTGGTGGAGCGCTGGGGCATGAGTGACAATGAGGCGGGCAGCTACCTCACCAGGCTCAGGGACCGGGCGCGGTATCACGAGGATATCTTTGGGGTGACGCTGCGCACCCATGAGGTCACCTCCCTGATCCGGTACCGCTGCCATTTCCTGGAGGAGAAGAAGCCATTGGGGCCGGAGCTGTGACAGGACACCGGCTGGATCAGATACATgaacacacattgacacacatacacaacactcGTGCTTCGGTCACATCACTCGGCCCCATTTTCCCATAGCAACACACAACCCTTCAAATGAACAAGAGACagcattcacacagacccacacataTACAACTGATCTAATAAAGCTAagcataaaaatacaaagatcttcaattttaattgtttaacgAATtcctaaataattaaatccataAATGAATCTCTCGAGACTCTCAGGTTGCCCTTCTGTTCTCATGCAGCCAGataaaaactttaattttgtaCAGTGCTTTgagatatataaaatacagcttCTATATTCTATATCCATATGCTTTCAACCCAGTGTGCCTCTGGGAGAGCCGTTTCACCTCCAGCTCACCTCTTCACTGCGTTGGTTAAAGTGCGAGATTGTAGAAGTGcttgtaatttatatattttattttatttcttctgccTCTTCTCCTTTATAATAAGATTTACTGTATATAAGACTCAAGGTGGTGGTTCTTTCAGGGagtgttttcttatttgaaatattaaaccaAGTATGtattacaaacaacaacaataaatgtcTGGTAGTTTTGTGAAACTCG

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0045776 negative regulation of blood pressure biological_process
GO:0007263 nitric oxide mediated signal transduction biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048668 collateral sprouting biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005829 cytosol cellular_component
GO:0004517 nitric-oxide synthase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043168 anion binding molecular_function

KEGG:

id description
K13242 NOS3; nitric-oxide synthase, endothelial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153906 lncRNA upstream 96102 12129878 ~ 12130747 (+) True G122744
TU153905 lncRNA upstream 97171 12128380 ~ 12129678 (+) True G122743
TU153898 lncRNA upstream 121326 12104670 ~ 12105523 (+) True G122737
TU153860 lncRNA upstream 210765 12011997 ~ 12016084 (+) False AMCG00002360
TU153790 lncRNA upstream 328166 11894628 ~ 11898683 (+) True AMCG00002355
TU154008 lncRNA downstream 131446 12372801 ~ 12373031 (+) True G122829
TU154010 lncRNA downstream 163587 12404942 ~ 12411141 (+) True G122830
TU154049 lncRNA downstream 790421 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA downstream 790421 13031776 ~ 13032991 (+) True AMCG00002390
TU154055 lncRNA downstream 810670 13052025 ~ 13052390 (+) True G122868
AMCG00002378 mRNA upstream 15530 12204021 ~ 12211319 (+) True AMCG00002378
AMCG00002371 mRNA upstream 105072 12106189 ~ 12121777 (+) True AMCG00002371
AMCG00002372 mRNA upstream 122283 12101806 ~ 12104566 (+) True AMCG00002372
AMCG00002370 mRNA upstream 139025 12081626 ~ 12087824 (+) True AMCG00002370
AMCG00002369 mRNA upstream 145267 12079963 ~ 12081582 (+) True AMCG00002369
AMCG00002381 mRNA downstream 931 12242286 ~ 12243888 (+) True AMCG00002381
AMCG00002380 mRNA downstream 3368 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002386 mRNA downstream 397131 12638486 ~ 12696128 (+) True AMCG00002386
AMCG00002391 mRNA downstream 780212 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002390 mRNA downstream 790404 13031759 ~ 13032761 (+) False AMCG00002390
TU153909 other upstream 86384 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 390680 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 532684 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 595957 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 849111 11376940 ~ 11377738 (+) False AMCG00002311
TU154058 other downstream 816718 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 884023 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4716806 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5674081 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 6590659 18832014 ~ 18838531 (+) True G123989

Expression Profile