RNA id: AMCG00002382


Basic Information

Item Value
RNA id AMCG00002382
length 3803
RNA type mRNA
GC content 0.62
exon number 30
gene id AMCG00002382
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12185034 ~ 12203026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACAGCAGATAACAATGGCGACAACGGCGACTGCAGCGGGGGGAGCGGGCTCTGGGGGCCCGGCAACCGGGCAGACGGGCGGCGGCGCCTCGGCCCTCTCCGTGGGCAGGAAGAAAGACGGGGGGCCCTCCGCCAAGTTCTGGGAGAGCTCGGAAACCGTGACCCAACTTGAACCGATTCGGCTCTGGATCATGAAACACTACAAGAAGTATGTTCAGACTGACTCCCCTTCCAACAAGTCCCTGGCCGGGCTGGTGGTGCAGCTGCAGCAGTTCCAGGAGGATGCCTTCGGGAGGAGAGTCAACAACCCTGCACTCACCAAACTGCCAGCAAAGTGCTTCCTGGACTTCAAGCCAGGCGGTGCACTGTGCCACATCCTGGGTTCAGCTTACAAGTTCAAGAGTGAGCAGGGATGGCGCCGCTTTGACCTGCAGAACCCATCGCGGATGGACAGGAATGTGGAGATGTTCATGACTGTGGAGAAGACCCTGGTGCAGAACAACTGCCTGAACAGACCAGTTGTGTACCTGGTCCCGGACATTGAGCAGAAACCAGCCAACAAGCTCAAGGACATCATCAAGAGGCACCAGGGCTCCATCACCGAGGACAAGTCCAAGGCCACACACCACATCTACCCCGCCCTGTCCCCGCAGGAGGAAGATGAGTGGCTGCGTCCTGTGATGCGTAAAGACAAGCAGGTGTTGGTGCACTGGGGCATGTTCCCCGATAgCTACGACACCTGGGTCTCGGCCAGCGACGtggagggggaggtggaggagccGCCCAACCTGGAGAAGCCCTGGAAGGTCCATGCCAAGTGGGTCCTGGACACGGATGCGTTCAACGAGTGGATGAACGAGGAAGACTACGAAGTTGAAGAGAACAAGAAGTCTGTGAGTTTTCGCCAGCGCATCTTCACGCGCGACGAGGAGTCGTCCCGCACGCCGGACCGGAAGGACAGGAAGGCGGCCGCCAGCGGGAAGAAGCGGCGGCGCTCGCCctcgcccccccccacccccgtcgAGTCCCGCAAAAAGGGAGGCAAGAAGGGGCACCCTGGGCCGTACTGGAAGCGGCGTGGCCACcgtgaggaggaggagccggAGGAGGACCTAACCAAGGATATGGAAGACCCCACACCTGTGCCCAACATGGAGGAGGTCACTCTGCCCAAGAATGTGAACCCTAAGAAGGACAGTGAGAACACCCCAGTGAAGGGCGGGACAGTGGCTGACCTGGATGAACAGGAGGATGAGCCCATGGTGACTGGAGGCAAGgaggaagaagagCCGAGCAAAGCGGAGGTCAACCGGTTGATCGACTCCAGCGAGGACAATGTGACTGAGCAGACCCACCACATCATCATCCCCAGCTACGCCTCCTGGTTCGACTACAACTGTATCCATGAGATCGAGAGGCGCGCCCTGCCCGAGTTCTTCAACGGCAAGAACAAGTCCAAGTCTCCGGAGATaTACCTGGCGTACCGCAACTTCATGATCGACACGTACCGGCTGAACCCGCAAGAGTACCTGACCTCCACGTCCTGCCGCAGGAACCTGACCGGAGACGTCTGCGCGGTGATGAGggTCCATGCGTTTCTGGAGCAGTGGGGGCTGATTAATTACCAGGTGGATGCAGAGAGCCGCCCGCTGCCCATGGGCCCTCCACCCACCCCTCACTTCAACGTGTTGGCAGACACCCCCTCTGGACTGGTACCCCTGCACCACCGTCCCCCTCAGGTCCCAGCCTCGCAGCAGATGCTGAACTTCCCCGAGAAGGGCAAAGACAAGCCGTCTGACCTGCAGAACTTCGGCCTGCGCACAGACATCTACTCCAAGAAGAACCCCAAGaGTAAAGGAGCCAGTGCCGGCAGGGAATGGACTGAACAGGAGACCCTGCTGTTGCTGGAGgcTCTGGAGATGTACAAGGACGACTGGAACAAGGTGTCCGAGCACGTGGGCAGCCGCACGCAGGACGAGTGTATCCTGCACTTCCTGCGGCTGCCGATTGAGGACCCGTACCTGGAGAACTCTGACGCCTCTCTGGGCCCGCTGGCCTACCAGCCCGTGCCCTTCAGCCAGTCGGGGAATCCCGTCATGAGCACCGTGGCCTTCCTCGCCTCGGTGGTCGACCCCCGCGTTGCTGCAGCGGCCGCCAAGGCAGCCCTGGAGGAGTTCTCTCGGGTGCGGGAGGAGGTGCCGGCGGAGCTGGTGGAGGCCCATGTGAAGAAGGTGCAGGAGGCAGCCCGTAACACAGGGCGTCTGGACCCCGCCTACGGCCTGGAGAGCAGCGGCATTGCAGGCACTGCGCCCGACGAGCCGGAAAAGACGGACAACCACACTACACCTGCACTCTGTGCTATGCCAGTGGTTCGGTGTAAGCCGTGTGATGGCAGCAGGGGGCAGCAGTGTGACAGCAGTCGGGGTGATGAGATAGAGGAAGCAGTGATACGGGATGTTAAATGCAAGTTTGCAGaagCCCCAGAGCCAGAGAAGATGGAGACTGAGTCGGAGTCTCCGCAACCCGAGAAGGTGGAGAGCAAAGAGGAGCCCGAGAAGCCCAGCGAGGCTGCCGAAAGGCcaccggagagagagaggccaaaAACCGAGGTCGTGGATTCTGAGAGGGAGGAGGCTGAGAATGAGGGAGCTGAGGAGAGCAAGCCAGACAAGGAAAAGGAGGAGAGCCAGGATGGTGCTGACAGTGGAAAGGAGGGCGAGGGTGAGGAGAGCAGGAAGAAGCTGGAACCTGAGGTGGGCGAGGGGAACATTGCCACAGCTGCGGCCGCTGCCCTGGCCTCCGCTGCCACTAAAGCCAAGcACCTGGCCGCAGTGGAGGAGAGAAAGATCAAGTCTCTGGTGGCTCTGCTGGTGGAGACGCAGATGAAGAAGCTGGAGATCAAGCTGAGGCACTTTGAGGAGCTGGAGACGATCATGGACCGGGAGAAGGAAGCGGTTAGTGGAGTGGAGGAAAGGGGGGAGGCAGAGGGGATGGAGTCGGGGGCCTGGCGCTGCTGGGCACACAGAGGACCTTTCGCGCAGCCTTCTTTCACCCTGGCAGCTGACTGGCTGGCAGACCAGGGGAGGGACAGGCTGGCAAGCGGCCGGCGTGTTCCTCATAATGAACTTGCAAAGCAATTCTCGATCCCTAGCGGACTGCGGCCATTTTCCCCGTCTCCCCCTGTGCTGAGCCAGTGCAGGCTGCGCTGTCGAGCCAGAGTGCTGCTGACAGCACAGGCCTCCAGATGGCACCCTCTGGCACATctggagcagcagcggcagcagctgCTGACGGAGCGCCAGGCGTTCCACATGGAGCAGCTCAAGTATGCGGAAATGAAGGCGAGGCAGCAgatggagcagcagcagcagcagcagcagcagcagcaggcagctGCACAGGCCCCCGGGGGTCACCACGGGCCCCCCCAGGGCATGCTGGGCCACACCGGCGCCCCCACCTTCCCGCCCATGCACCACCCCATGGCCGGCCATCACCCCCAGCCCACAGGGCCAATGGGTGGAGCCAATCAACCAATGGCAGGGCGTGTCCTGCCCACCTCCGCTCCTCCTGGCGGGCCTCCCCAGCCCAACATGCCCGCCATGATGGGCCCCCGACACCCTGGAGCTCCCAACGGCATGTACCCCACCCCTCCGCCTGCACAGCCTGATGGGATAGCGCCGGCGCCGGTTGGACCTCCAGTCACCGCTCCCTCCCGCGTGACTGAAAACTAGAGCACCCACCCACTCTGGGACCCAGGACCTCCCGACACACCAAACCAAACATACCCCgcccgcccccc

Function

GO: NA

KEGG:

id description
K11649 SMARCC; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 140015 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 313655 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 320978 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 325709 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 336842 11847081 ~ 11848192 (-) True G122633
TU153974 lncRNA upstream 39095 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 797815 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 849000 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 864195 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 865808 13068834 ~ 13069238 (-) True G122879
AMCG00002374 mRNA downstream 13353 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002376 mRNA downstream 42690 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002375 mRNA downstream 45278 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002377 mRNA downstream 84114 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002373 mRNA downstream 88392 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002384 mRNA upstream 45121 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002383 mRNA upstream 48266 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002385 mRNA upstream 280868 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002389 mRNA upstream 779803 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002392 mRNA upstream 829603 13032629 ~ 13044363 (-) True AMCG00002392
TU153859 other downstream 178683 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 312172 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 330143 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 450710 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 499945 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 825171 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 825171 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1446202 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2738234 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4633130 16836156 ~ 16839722 (-) True G123585

Expression Profile