RNA id: AMCG00002385


Basic Information

Item Value
RNA id AMCG00002385
length 519
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00002385
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12483894 ~ 12504026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCTAGAGGCGGCCGGCCGCTCAGCCCCGTGGCTCGGAGATGCGGAGGTCAGACACTCCACTCAGCAGCAGACCAACAGAGAGATCACCAGCACCAGCCAGCTCATCAAGCAGCTCTGTGACATCATCAGTGGCTCCTCACGGCAGGACCGCCTTAGACTAACCCGGCTAAAGACGGAGCTGTCTGAGTCCGTTCAGCGCTATGGAGACCTGCAAAAGAAAATTGCAGACAGGTCCCGAGCCTTGCTTCCCCCCGCACAGAAGGAGCGAAAACCGAGTCCCCAGACCCCCTTCGCGGAGCTGTGCGATGAGGAGCCGGTGTTCGGCCGAGCAGAGACAGCGGAAGGGGACGGCCAGGCCTTCCTGTCCGAGATCAGCGAGGAGGACGTGGAGGCTCTGCGGCTGAGGGAAGAGGCACTGCTGCAGATAGAGAGGGACATGCTGGACGTCAGCCAGATAATGAAGGATCTGGCCTCTCTGGTGCATGAGCAAGGGGACGCCATCGGTACGATTTGA

Function

GO: NA

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153975 lncRNA downstream 239980 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA downstream 239980 12242121 ~ 12243914 (-) True G122801
TU153878 lncRNA downstream 438875 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 612515 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 619838 11862903 ~ 11864056 (-) True G122621
TU154042 lncRNA upstream 496815 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 548000 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 563195 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 564808 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 637842 13141868 ~ 13147672 (-) True G122897
AMCG00002383 mRNA downstream 223488 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 234948 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002382 mRNA downstream 280868 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002374 mRNA downstream 312213 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002376 mRNA downstream 341550 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002389 mRNA upstream 478803 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002392 mRNA upstream 528603 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002398 mRNA upstream 590038 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002395 mRNA upstream 614454 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 647563 13151589 ~ 13152326 (-) True AMCG00002399
TU153859 other downstream 477543 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 611032 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 629003 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 749570 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 798805 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 524171 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 524171 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1145202 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2437234 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4332130 16836156 ~ 16839722 (-) True G123585

Expression Profile