RNA id: AMCG00002387


Basic Information

Item Value
RNA id AMCG00002387
length 6823
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00002387
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13071426 ~ 13085078 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTCTTTGGAGGAaagaggggaggtgggggtcGCGGCAGCCGCTGCCCCGGGCTCCTCCACGGCCGGGCTTGGTGTCGGGGCGGTGGGCGCCGGCCTGGAACCGGGGGCTGGGGGACAGGGGCTGCCGGTGGGACAGGACGAGCCTGGCGTGCGGAGGGAGGGACCCGGGCCCGAGGCTGATCCGGACGCGCCGCCCAAGAAGCGGGTGCGACTACAGGAAGGCGAGGCAGGGAAGCTGGAGGAGAGACTGtactctgtgctgtgctgcaccGTGTGCCTCGACCTACCCAAAGCCTCCGTCTACCAGTGCACGAATGGGCACTTGATGTGTGCCGGCTGCTTCATCCACCTGCTGGCGGATGCGCGGCTGAAGGAGGAGCAGGCCACCTGCCCCAACTGCCGTTGCGAGATCAGCAAGAGCCTCTGCTGCCGCAACCTGGCTGTGGAGAAGGCCGTGAGCGAGCTGCCCTGCGAGTGTGGCTTCTGTCTCAAGCAGTTCCCCCGCAGCGTGCTGGAGAGGCACCAGAAAGAGGAGTGCCAGGACAGGGTAACTCAGTGCAAGTACAAACGGATTGGCTGTCCCTGGCAGGGCCCGTTCCACGAGCTGACCGTGCACGAGGCAGAGTGCTGCCACCCCACCAAGACGGGCAATGAGCTGATGGGCATCCTGGATGAGATGGACCAGTCCCACCGCAAGGAGATGCAGCTCTACAACAGCATATTCAGCCTGCTGTGCTTTGAGAAGATCGGCTTCACAGAGGTGCAGTTCCGGCCATACCGGACGGATGACTTCATCACGCGGCTGTACTACGAGACGCCACGCTTTACCGTGCTCAACCAGACCTGGGTGTTGAAGGCTCGCGTCAACGACTCGGAGCGCAACCCCAACCTGTCCTGCAAGCGCACCCTCTCCTTCCAGCTCATTCTGAAGAGCAAGGTGAACTCGGCGCTGGAGTGCTCCTACCTGCTGCTGAAGGGGCCCTACGACGACGTCAAGATCAAACCCGTCATCTATCACTATGTCTTCAGCAACGATGCCAACGAGACTGACTACATGCCCCTGCCCATCATCGACTCGGTTGAGTGCAACAAACTGCTGGCTGCCAAGAACATTAACCTGAGGCTCTTCATTTTCCAGATACAGAAATAGTACGTGTGTGGGGGGTTGTAGGGGGGCGGAGGATGGTGAGCCCCAAGAGGCACTGCTGATCCCCAGCTGCAAGAAGCCTCTTCCATCTCCACCTAAACGAATAACAGCCGAGACGGGAGCACAGCCTCAGAAAGCACCACTGAACCACAGTTACCTcttcaagaacaagcaggaaaaGTCCACACCACTAGAGCTGAGGGTGGTGGGGgatggagaggaggggggaggagagagatggaggaacAGCCAAGGTGTCATCGTGtcagatttgattaatttagcATCAGCAGAAGGCTTCCCATTTTTCCCCACAAAGGTTTCTCTGCCCGCTCCACGGTTCCCCTCTGATTTGCATGAAAAAGTTTGAGATGCAATACTGATAACTGTGATACTGTGTTGGTGATTTTCCAGAGGAGATCCCCCTCTGAATCACTGCCGTCAGTCCAAGGCATCACTTCTCTCACACCACGTCTGTCTTTGTCATCTTGAACGAGTCGTTTAGCTTTTCTCCACTGTGGTTTGGAACTTGCCagactgtttgttttaatttttaatttaatttaattgtatttatttttctcatcatAACCCTTTCAACTTCTCTCCGTTCCTTCTCTTGTGTGTACTGTGTTTATACACTGTAGCACTCGCAACTAAAATAAGGACCACAGCGGCTGTTCCGATTTCCAGCTGCCTGGAACTATGCTTCTCCCCGTAAAATCTCATCTGCtgtgactttttaattattttttttatcgtTATTGAAAAGGAGAATCATAAATCCTTCTGAGacgtttgttttgctttgctcgTCTGTATCACTTGGAGCTCCTCACACCTTCCGCTCTCTATTTGAGCAGCAGGCATCAGTTTTCCTAGAAGAACAATGCAGTTGCAGACcacttttcttccccctctgATTGATGGCAGGAGAGTAAGAGTGTTCTGTCTGTACACATCCTCTGtgacataataaattaaatttctgGGCATGCGAACTGAAACTTTACAGCGACTGGTATTCCTTGGGAAGATTTTCTACTGATTGCTAACATTTTAAGAAAGGACTATAGGCTAATTATGAACCatgcactttttttgttttactttttccccTTTCTGCATCACTTGCTGACATGTGAAAGAGAATCGGAGACGGAAGGAAAGTGATTTCTGTAAAGTATTTCTGTTCAGAGTGTCTGGAGGGAGGGTGTCATTTCAGTCCATTCTCTTAAGTTAGTTTCCAATTCGTCTGGGAATGGCTATGCATAAACATTCGGCACACCCAAACAGCCTGTGGCAGTTTCTCTCTCAATAGGTGGGCTTCCCTCCTCGACCCCCATCTGACTTATCACTGTCATTTTCTGTGTCGAACATTGTGAGGAAAACCAACTAAATTCTGCTTTTTCACCCTCGCTGTCAACCCCCCACCCGATTAAGAATACATCCAGTTAGGCTCCAAATGCTGTAGAATTTGGTGCGAACTGTCAAACGAACCCAGATCAATAAGCTTGACCCTGTGCTGGGCTGAGATTGGGAGCTCCAAGCAGTCCACTGGGGAGTGAATGAGTGTACCATGAGCTAACGAGTGCATTGCCACTGCAGCTGCGTACAGCCTGTCCAGGAAGGTCCTATGGTGAGGCATTGGCCAGAATCCGCAGGGTTAGTGGTCAGCTGGCAACATGACTCGAATTCTGCAAAACTCTTATTAGCCGactgaaatgttattatttgttttgtttgattctaTTCTTGTGTTGAAAACTTGCCAATCATagaagtgcttttgtttttaaatccctAGTCTAACGAGCATTTGCGCTCGATAATGGAATGACAAATCTTTAATGCACGATTGTACTCCGGAGATACTCTGCAGGGGCGTACTAGTACATGGAGCAACGATTTGCAACGTGTAACTCATTTTAGTAGTATAGGAAATACTATAgcctttttgtttgtgtcttgaaatgtatacatttaaaatgcagtaaatctCTAATAAGACAGTGCTTCGCAGGGTAATGTCTTTTGCACAAACTGATCAGCTTTGTGATATTCTTCCACAGGTGGCATGGTAGAGGTCAGATTCAGATGTGAATGTAATGATTTGAGTATTGTAACATCGAGGACATACTACTGTTTTAGTCACAAACAATCGGCCTGCAATTTGTTCGATCTGTAAGtaatttctgcagcattttaGCTGTAGCTGAGTGTCCAGAGCCTTAGAAGCTATAATATGTAAATGTCTCCATTTTTGctgaaaaagtaatttttcaGGCCTGGTAGCACCACACAAACATTGACTGTAGATTCCCTTTTGAAATAGATTAtaatgcacatatttattttcttctttaatttgttgttcttgttttactCAAAATAGTCACTTGAATAAACGTATTGTGAATAAAAAGGGTTTTATTGTACGTGTTTAAATCCCAGGGAACACATGACTTGAACTTTGCAATCGTGTTTATATCCACGTATACGTATGGACTAACTATTAACTATTTAAAGGCCTCACATGTTGCCATTTTAGAATGAGCTTTCCACTGTCCTATACATTCTGGCCAGTGCTTCCGTAGGCTACCAAGGGTTTGTATATTACCATTTCCTACAAGAGTAACATCTGTACAGATTACTATGATACATACTGTGAATGTTGgtcttgattttgattttattattattgagggttttttttgtttgtttttttcttctctattaCTGGCCTCCAATGGACTTACTATTAAAAGCCATTGGAGGCTATTATCTGAAAcaatcatgtatttatataatctcGGAATGGCTATTCACTGAAAGCCTATGGTTTACCCTGTCAGGTGTTCATGATCAGGACCTGTCTCTCCGTGTGGCTGGCTGCTCTCTGTGTGACTGGTCTTGTGTGGGGACTTCCTTGACCACTTCTTCTGAATCTtcttttatgttaatttgtttgtccCTTTAGTATCGTCCCATCCTCTGTGGCTTAAATCCTCTCTCTCCTTGATGTTTGGCATCTGCTCTGATCAAAGGCTTTTTCAGTGTCCGAATGCTGTTCTTCTTTCGATTGTGATGTCTGCTCACTGCTGTGTGTGACACGGACACCAAGCTGCGCTGCTATTAGTCTTGTCACCGGGCAGGTTGGAtggaaaaagtttaaaaaaataatatataataacaaaaacattgaaagagAATAAGATCCATGCAAAGCTTAAGCATTTTCAGGACTGAATTGCTACTTAACATTAGTAGGCGAAGCAGtgttaaaatagttatttgtgtCGCAGTGTTTGCCATATTCTTCTTCCAGTGCAGCTCAGATGGCTGTTTTCTTCTTACTGAAGCTTTACTATTTCTTTGCCAACTTTTGCGGTGTCATATTTCCACTCTTTTGCTGTAAATGTGCCTTCTCAGTGAACGCAGCTCTAGGTATGAGTTAGCGGAGTCGATACCAGAATGAGCCTGGCTGTTGTAGAGTGATCTCTTACACATGCTAattttgccatttaaaatacataaagaagtAAATCCATGTCTCTTCTCTTCTGGTCAGCAGCTTCTCCTGCAGTAGGGTGCTTTATGCAGAGCTTGCCTGTTTTGGGGGTCTGATGTCCACCTCGGTAGGGAGTGTGTTGTAGGTGGACAGGGGCCGGCGAGCCAAGCTGTGGACGGAGTGTTGTTCTGTATGGTCCACTGTTTCCTATGAAATGTCAGTGATTATTACATTCCCAGATGATCATAGCTACTAAATCTCATCAGGTCTCAGCTACAAAAAGCTTTGTGATATTTCAATTCAGCATAGTGGCCATAATAAAGTGAAAAAGCCACAATCACACCTTAGTTGTTTCCTCCAAGTCCTGAAAAAATTTCCATCTTGTCATATTAATCAAGTGAGCCCTAGCAGCCTTCCTAAAAGCCATGGACTTGAACAGTACAAAGTGACTCACCACACAGAGTTTACTGTACCAGGAAttactttttcttaattttttctttgCCTCGCCCACATGTGGGCAGCCACATAACCCAACCCAAACCACGATGGGATCGGGAGACTGAAGGCTGTATGTGTGCAGTCTCTGAGCTGGGCATCCTTTCTGACCTCTGTTTGAGCAGTTGTAGTTAGCCCTGTTTTGTGCATAGGCTCCACCAGGTGGGTCGAGGAGGTATGGCAGGGCCCTTTGGTTTCCAGTGCAGCGTGCCCACAGTGATAGGGCAGCATGGTCCATCAGTCAACCACGGGCAGAGCTGTCGAGTCCGTTAAGTCTCTAGCATCTGCAGGTATGTGTGGGCAGTAAACCTGGGACAAATacagttaattttgttttcggaataattttaaataaacctactttcaaagtgtctcagaatggaaccaatttgttttataaacacacacccaGAGGGGGATTCATTTTACAGAACTTTGTGCAGTTTTCCAACAAACCACATTCACGTAGACTCGTATGTCATATCAGAGAGTGAACCAGATTCCCTCTGATGGAGGGATGTGTTGTGGCGCAGTGCGAGGGGATGACCGCTTTGTTCATGTAGAGGCTTATAGAGAGTATGGTAAACAATGTAACCTTGCAGCAGGCAGGGAAGGGCGATTGTGCGAGCGCTGACTGAATGGGGGGTGGATTTGAGAGTTGAAAACATAAGGTAGCACAGTAACAGTCAACAGTTAACAAGGGGTAAATTGAAAATATCCATAGTGCCTCAGTGAGGAACAGGACAAAATCAAATGCCAATTTGAGTGGCAAGACTGTTCTCCTCTGCAAGGGCCAGATCTTAAGGTCCATTCAAATCCCTGACCTCCATGGTGAAGGACAcctctcctcccccccacccctgatgAGCGTGTATCTTGTAGTCACTTCAGCACTGATCGCTCTCATGACTGGCAGTTCTGTTTGATCCAAAGACGACGACTTTTTTTTGTCGAACCCGAGATGTGCGTGGGCGATGTGGAGTCCTGTGGgttgtgaagtgtgtgtgtgtgtgtgtgtgtgtttgtgcgagTGTGTTTCAGCCTGCAGTGTTACTGATACGGTGCtgcattgtgtattttgtttccattttgttttaaatctgagCCTTAATTTCTCTGGCTGTATAGTCCAAGGTCTACAGTGAAGGAGGGGGGGGTGATACTCTAATGTAGCATGTCTGTATGTACTGACCTGTGGTCAGACTGACCTCACATGGAAACAAGGACCAGGCTTCTGAGGTCTTTATTTATAGCACCTGTAGGTTTAAACATTCACAACTAATTATTACCAGATTATTTActgttcttatttttcattttaatgtgcttgcttttctgtttttatttttattttgtttttaacatctgTTGATTCAGTTGTGTTTTAACAATGTTTAGGAATGTAATGTAGTGTATTTTCCCCTTTTAGCTGCACTGTTACCATAGGGTATTATTTAACTGTTTCCTAGTAaagttttaagtttgccttgcAGTTATGTGATAAAACAACGGTCTCTTGTGCTTTATTTTACCATACAGCTGTACATTCATTAACTGGAAAGAAGGGGGACTTGTCCTTGAGTTAGTGATGTTTTCCTGCCAAAAAAGcacagggggagggggggggtcaTGCAATCAGCAGAAGAACTGGGGGAGTGCAGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154064 lncRNA upstream 3791 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 19036 13052025 ~ 13052390 (+) True G122868
TU154049 lncRNA upstream 19455 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA upstream 38435 13031776 ~ 13032991 (+) True AMCG00002390
TU154010 lncRNA upstream 660285 12404942 ~ 12411141 (+) True G122830
TU154105 lncRNA downstream 102871 13187949 ~ 13188278 (+) True G122911
TU154108 lncRNA downstream 104204 13189282 ~ 13189862 (+) True G122914
TU154127 lncRNA downstream 219619 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 460986 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 481336 13566414 ~ 13570811 (+) True G123041
AMCG00002388 mRNA upstream 594 13044693 ~ 13070832 (+) True AMCG00002388
AMCG00002390 mRNA upstream 38665 13031759 ~ 13032761 (+) False AMCG00002390
AMCG00002391 mRNA upstream 47317 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002386 mRNA upstream 375298 12638486 ~ 12696128 (+) True AMCG00002386
AMCG00002380 mRNA upstream 824437 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002394 mRNA downstream 4338 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002393 mRNA downstream 40300 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002400 mRNA downstream 55589 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002401 mRNA downstream 105951 13191029 ~ 13194076 (+) True AMCG00002401
AMCG00002402 mRNA downstream 143449 13228527 ~ 13237405 (+) True AMCG00002402
TU154058 other upstream 9741 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 930961 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1235257 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1377261 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 1440534 11629012 ~ 11630892 (+) True G122482
TU154081 other downstream 40300 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 3873083 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4830358 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5746936 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 6045325 19130403 ~ 19132358 (+) False AMCG00002561

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029582 False 1818 mRNA 0.56 4 NC_007130.7 42919279 ~ 42928979 (-)
grasscarp (Ctenopharyngodon idella) CI01000054_01378423_01387679.mRNA True 1863 mRNA 0.55 4 CI01000054 1378293 ~ 1388263 (+)