RNA id: TU154058


Basic Information

Item Value
RNA id TU154058
length 1301
RNA type TUCP
GC content 0.63
exon number 10
gene id AMCG00002388
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13044693 ~ 13070832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGCAGTTGGGGGACCTGTGCTGCAAGCTGGGCTGCTACAGCAAGGCCCTGGATGCCTACCACACACAGcTGTCCAGCGCTTTGGCCCTGGGGAGGCCATCTCGGGAGCTGGCTGTGATCCACGTGTCTCTGGCCGCGACCTACACTGACCTCCGGCAGCATGACAAGGCTGTCCAGCACTACAGACAGGAGCTGAGTCTGAGAGAGGGCAACCCCAAAGAGGAGTGTGAAACCTGGCTGAATATCGCAGCGTCCCTGGAGGACAGTGGACAGGGCCTGGAGCAGCTGGAGCCCTGCTACCGCACAGCCCTGGAGTGTGCACAGAGAGCACAGCGGCTCAAGCTACAGTGTCGGGTGTTGAGGCAGTGGCTTTCAGTGCAGCAGCGGGGGGGCTCGGCGCAGTCCGAGCTGACGGCGGCTTCGCTGGCAGAGCTGTGTGGTGCAGACGGTGCTGACGGAGAgagcgaggaagaggaggaggaggaggaggaggagaacagTGAGCTCCTAGATGACAGTGACATTCATCTCTCTGACTCAGAGGAGGACGATCTGGAGGAGTACGACAAGATGATACCTGGCAGGAGGAAGGTCAGCCGGTGGAACCGGCGGAACGAGAAGGGCGAGACGCCGCTGCACCGAGCCTGCATCGAGGGCAACCTGAGGGGGGCACAGTGCCTGCTGGAGCAGgGTCACCCGGTGAACCCCAGGGATTTCTGCGGCTGGACCCCCCTTCATGAAGCCTGTAACCACGGCCACCTGGAGATTGTGCGGGCGCTGCTGGACCAGGGGGCAAATGTGAATGACCCTGGGGGTCCGCTGTGCGAGGGGATCACTCCACTGCATGATGCCCTGAGCTGCGGACACTTCCCCGTTGCCAGGCTGCTGGTTGAGAGGGGTGCCTGTGTCAGTCTTCGCAACTCGAAGGGCGACACACCCCAGGACAGCCTAAGGCAGTGGCTCAAGACCTACAGTAAACACCTGGACCAGGAGACACGGCAGGAGTGTGTTGAGATGGAGAGATTACTGAGGAGAGCAGCTGCTGGGAATGTGCCGGTGTCTGCGCCCCAGACCGTAGTGCAGCCTCTCAGTGCCCTGCAGGACAGCCAGCTGTTCGATGCGGAGAACTCGGAGCCACTGGTGCCTCCTGCCGGGCGCTGCTCTGGGGTCCCCTGCCGTAGTAGGGGCAGTGGGAATCTgggcagcaccagcagcagcagagggcGCTCCGGGGGCAGAGAGGAGGGATGGCGGAGACAGGCGGAGGAGGAGTGGAGCAGAGAGACAGCCCCTGCTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154055 lncRNA upstream 5683 13052025 ~ 13052390 (+) True G122868
TU154049 lncRNA upstream 6102 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA upstream 25082 13031776 ~ 13032991 (+) True AMCG00002390
TU154010 lncRNA upstream 646932 12404942 ~ 12411141 (+) True G122830
TU154008 lncRNA upstream 685042 12372801 ~ 12373031 (+) True G122829
TU154064 lncRNA downstream 5580 13067265 ~ 13067635 (+) True G122876
TU154105 lncRNA downstream 126264 13187949 ~ 13188278 (+) True G122911
TU154108 lncRNA downstream 127597 13189282 ~ 13189862 (+) True G122914
TU154127 lncRNA downstream 243012 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 484379 13546064 ~ 13546300 (+) True G123039
AMCG00002390 mRNA upstream 25312 13031759 ~ 13032761 (+) False AMCG00002390
AMCG00002391 mRNA upstream 33964 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002386 mRNA upstream 361945 12638486 ~ 12696128 (+) True AMCG00002386
AMCG00002380 mRNA upstream 811084 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002381 mRNA upstream 814185 12242286 ~ 12243888 (+) True AMCG00002381
AMCG00002387 mRNA downstream 9741 13071426 ~ 13085078 (+) True AMCG00002387
AMCG00002394 mRNA downstream 27731 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002393 mRNA downstream 63693 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002400 mRNA downstream 78982 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002401 mRNA downstream 129344 13191029 ~ 13194076 (+) True AMCG00002401
TU153909 other upstream 917608 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1221904 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1363908 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 1427181 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 1680335 11376940 ~ 11377738 (+) False AMCG00002311
TU154081 other downstream 63693 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 3896476 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4853751 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5770329 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 6068718 19130403 ~ 19132358 (+) False AMCG00002561

Expression Profile