RNA id: AMCG00002389


Basic Information

Item Value
RNA id AMCG00002389
length 876
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00002389
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12982829 ~ 12997422 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCCTCAGGGGTGGCTCCTTTGCCTTATTGCTGTCTCCTCAGCATATGCCGTTAGTGATCCCCCAATTACCTTTGATGAAGAAGTATTGCTGGACTTGCtgAAACTGAACAGCACTGAGAAAATCCCAGGGGTCTGCTATGTCTGCAGGACTGTGGTGACTGAGGTCAGGAGAATGTTACCGGTCAACGATACCAAGCAACAGATCTGCAGAGTTCTGGAACATGTCTGCCAGACGACACATGTGTTGAAGTTCCTGTGTCACAGGGTTGTGAACAACTACATCAAGCAGCTGGTGGAAAACATCTTGCTGCACAGCAGCCCCAGGGCCATCTGCCGGGCCATCCGCCTCTGCTGGTGGTGAAGCTGGGCTGCCGAGCCCCTCACTCACATTGCTTCTCCCTTTCCTGCTAATGTAAAGCTTTATATTTCACATGCAATCATTCAGTCAAGATCTGAATATGTGCACAATCAATGAGGCCAAACCAAAAATAGTAAAGTTAAAATTACGTGACAATTATgatattttcataattgtatgtctatatatacagtaacatatatataaatatttgtttaaaaaagtaaaaggttTTCCAGATTTCATAATATTATGAGTTGAAATGAAAGTGACTTGCCCACATCGTCAGTGATGATTGTGAGAAGCGATAAGGTTCTGCCCTGTAACGACTTCCATTAATGCAAAAcggctgcttttttttttttctgaagagtgagtgtatatgtaatgtAGCAGAGTCAATAAAGCAAGCAACAACTTCACCAAGCTCCTGTGTTTCTGTGACTGAAATCATGAGTCAAAGAGCTACACATGGCTATTACAGCTGCTGGTGACACAGAGGGAAGACAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153975 lncRNA downstream 738915 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA downstream 738915 12242121 ~ 12243914 (-) True G122801
TU153878 lncRNA downstream 937810 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 1111450 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 1118773 11862903 ~ 11864056 (-) True G122621
TU154042 lncRNA upstream 3419 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 54604 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 69799 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 71412 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 144446 13141868 ~ 13147672 (-) True G122897
AMCG00002385 mRNA downstream 478803 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002383 mRNA downstream 722423 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 733883 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002382 mRNA downstream 779803 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002374 mRNA downstream 811148 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002392 mRNA upstream 35207 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002398 mRNA upstream 96642 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002395 mRNA upstream 121058 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 154167 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 154946 13152368 ~ 13179775 (-) True AMCG00002396
TU153859 other downstream 976478 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1109967 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1127938 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 1248505 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 1297740 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 30775 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 30775 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 651806 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1943838 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3838734 16836156 ~ 16839722 (-) True G123585

Expression Profile