RNA id: AMCG00002390



Basic Information


Item Value
RNA id AMCG00002390
length 492
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00002390
representative False

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13031759 ~ 13051971 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTGTACCTGcgatctgtgtgtctgtcccacaatgcactgggCTCCACGGGGTTGGAGCTCATCCTGAAGACGCTGCCGCTGCATTCCCTCACACACCTGTACCTGTGTGCCATACGCAGGAGCCCTGCAGACCCCCCCGCCACCGAGCACCTGACGGCACACCTGTCCCAGTCTCTCGATCTGTCTGGGAATCCTGGTGTGACGACAGCAGGGCTGGAggctctgctctgctccctgCGAGAGGCTCAGCGGGCCTTGCGCTCACTCAACATGGCCGTGTGTCGGGTGTCCGGTCCCTGGGATGGTGTAAGTGTGGACAGCCTGTCCTCCTGCGTGGGGGAGTTGCGTCTCTGCTCTCAGCGCCTCAACAAGCTGGACCAGCAGGCCGTGCTGCAGAgctgggggggagagggggcggTGGCTGGGGGGAGGGTCAGCTTGCTCTCCCGACACAGCAAGTGTTTCATCAGAGCCCACCACCTTAGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154010 lncRNA upstream 620618 12404942 ~ 12411141 (+) True G122830
TU154008 lncRNA upstream 658728 12372801 ~ 12373031 (+) True G122829
TU153906 lncRNA upstream 901012 12129878 ~ 12130747 (+) True G122744
TU153905 lncRNA upstream 902081 12128380 ~ 12129678 (+) True G122743
TU153898 lncRNA upstream 926236 12104670 ~ 12105523 (+) True G122737
TU154055 lncRNA downstream 19264 13052025 ~ 13052390 (+) True G122868
TU154064 lncRNA downstream 34504 13067265 ~ 13067635 (+) True G122876
TU154105 lncRNA downstream 155188 13187949 ~ 13188278 (+) True G122911
TU154108 lncRNA downstream 156521 13189282 ~ 13189862 (+) True G122914
TU154127 lncRNA downstream 271936 13304697 ~ 13305599 (+) True G122929
AMCG00002391 mRNA upstream 7650 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002386 mRNA upstream 335631 12638486 ~ 12696128 (+) True AMCG00002386
AMCG00002380 mRNA upstream 784770 12244723 ~ 12246989 (+) True AMCG00002380
AMCG00002381 mRNA upstream 787871 12242286 ~ 12243888 (+) True AMCG00002381
AMCG00002379 mRNA upstream 790404 12226849 ~ 12241355 (+) True AMCG00002379
AMCG00002388 mRNA downstream 11932 13044693 ~ 13070832 (+) True AMCG00002388
AMCG00002387 mRNA downstream 38665 13071426 ~ 13085078 (+) True AMCG00002387
AMCG00002394 mRNA downstream 56655 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002393 mRNA downstream 92617 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002400 mRNA downstream 107906 13140667 ~ 13141587 (+) True AMCG00002400
TU153909 other upstream 891294 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1195590 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1337594 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 1400867 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 1654021 11376940 ~ 11377738 (+) False AMCG00002311
TU154058 other downstream 25312 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 92617 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 3925400 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4882675 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5799253 18832014 ~ 18838531 (+) True G123989

Expression Profile