RNA id: AMCG00002393


Basic Information

Item Value
RNA id AMCG00002393
length 1637
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00002393
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13125378 ~ 13129697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTCTGCCAGGGAATTTCCCAGCTCGGCTCCTCTCCCTGGGGGGGCCTCAGACAGACTGCACGTGTCGGAGGCGTGTTCTCTCTCCGTGCGCACGGTATAACTCACTGCCAGGCAGAGGCACAGGGACACACTCATACAGGGACACTTGAGAGCTGAGCAAGATTTTCACATGCTGTGGTTTATTGTCAGTGCCATTCTGCTCATCATGGGCATTTCAAAGGGGCTGCAGCAGaagaagaagaaggtgaCCGCAAGAGAGGTGCCGGGGAGAGAAGAGCGGATGCATCGAAAGGACCGCGAGAGGCTGGGCCACAGGGTCAGGAATGTGCTGGACGCCAGTGAGAATGACCTGCAGTGTGTAGCCCTGCTGCTGTCCGCCGGCCTGGTGGATGCTGACCCCTCCATGTCCTCCCTGACACTGCAGATCTTCAAAAAATACAGAGACGCAAGGACGGACACGCACTGAACCCCGTCCCCAGCTCTGAAACAGCCCCCTGGGTGCACTGGGTCAGCGACAACCCCAGCATCAGTGTAGCTGTGTCCTGCAGGTCAGGGAAGCAGCTGGGCACCATGTGTACTATGCGGGTCACAGTACTGCAAGCCCCACTGAGCACAATTGTTCCGAAGTGTACACTGGTGTATCCATTTAACTTTGTATCTCTATGAGAATTCAAATTCTTTGTATCGTTTTATTAATTGCTATCAGCACTCCTATCAGGGCTCcacaattctgaaaaagtatGGATGTTTTGAcaagaaagtattttaatttgtgtgtatttttttattgttgctttatttgtttatcactAGTCTGGATTCCTGGATTTGTAAACAGAATCAAATAAAGTCACCGAACTGGAAAAACCAGCAGCTGATGCCCTGTCGGCTTCCTTGCGTATGTATGtacgtgagtgtgtgtgggtgtgcccGTGGCAGGGTTGCTTGTTTATGTTCCTATGTGCGTGTGCATTCAAATACATGCGTGACTTCGTATGTGACTGAGTCAATACCAAGGCCTGACTGAGATTCCACCAGTTTCCAAATAGTTTTTTGGCCCAGAGACCAAATTTTCTAAAAGCAACTTAAATATCAATGAGCAAATCTAGCAAGAGACAGAGCAGGAGCAGgacattaatattgattttagtttatatagttttgaaaatacagtggaATACTTGTGTGGCTCCTTGGAACTGGATGCATTTACTCTAACTCCCCACTAGGGAGAGCGCACACACCTCCGATAACACAACCCTCCGTCACCGCCACTAAATCCAGGACTCGGCCACAGTGCCTTCGGGCAGGTTTATTTGAACTGAAGTCCGTCTATTTtgaaagaatgtgaaaaatagAATATTCGCTATGCTAACAAATCTAACGACACAAGTTCCCTCCCTGTCTCAGATCTCTCCCCTTTCTTTTTGGTTTGGGGGGGAACAATAATGATTGGCAGTAACTGTGATAATATCTGTGACTGTAATTTGACTGAATTTATTTAGTCATAATTTTCTAAAgcttttatatgtattttgtaatgattgtagtgcttttgtaatgctttacaatGTGTCTTGCATATATGGTAAGTCGCCccggataagggtgtctgctaataaataaataacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154064 lncRNA upstream 57743 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 72988 13052025 ~ 13052390 (+) True G122868
TU154049 lncRNA upstream 73407 13031776 ~ 13051971 (+) False AMCG00002390
TU154050 lncRNA upstream 92387 13031776 ~ 13032991 (+) True AMCG00002390
TU154010 lncRNA upstream 714237 12404942 ~ 12411141 (+) True G122830
TU154105 lncRNA downstream 58300 13187949 ~ 13188278 (+) True G122911
TU154108 lncRNA downstream 59633 13189282 ~ 13189862 (+) True G122914
TU154127 lncRNA downstream 175048 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 416415 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 436765 13566414 ~ 13570811 (+) True G123041
AMCG00002394 mRNA upstream 34995 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002387 mRNA upstream 40300 13071426 ~ 13085078 (+) True AMCG00002387
AMCG00002388 mRNA upstream 54546 13044693 ~ 13070832 (+) True AMCG00002388
AMCG00002390 mRNA upstream 92617 13031759 ~ 13032761 (+) False AMCG00002390
AMCG00002391 mRNA upstream 101269 13021567 ~ 13024109 (+) True AMCG00002391
AMCG00002400 mRNA downstream 11018 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002401 mRNA downstream 61380 13191029 ~ 13194076 (+) True AMCG00002401
AMCG00002402 mRNA downstream 98878 13228527 ~ 13237405 (+) True AMCG00002402
AMCG00002408 mRNA downstream 142032 13271681 ~ 13304556 (+) True AMCG00002408
AMCG00002409 mRNA downstream 178348 13307997 ~ 13328399 (+) True AMCG00002409
TU154058 other upstream 63693 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 984913 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1289209 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1431213 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 1494486 11629012 ~ 11630892 (+) True G122482
TU154987 other downstream 3828512 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4785787 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5702365 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 6000754 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 7144440 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile