RNA id: AMCG00002397


Basic Information

Item Value
RNA id AMCG00002397
length 2074
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00002397
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13182721 ~ 13186037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGCAGCTGCAGTTGCGCATGGATTATTTCATActagtttgaactgttttcatTATACTTATTACCTATGCTTTTTATTATGTGGAGAAATTGATCAGTACATGTGTGGACATACGTCTAGAGAGACAAGTGACATTAAACGGAGAAAACaggcctgtttgttttgtgaggTCATGTAAGCTATTTTTCGTAGCCTGTATTTTCTTCTACGCTTGCCGGGAAGCAGCGTGTCCTTTTAAACAGTGCATTATTCCGTACCTTATCCAAGGGAgttgtgtgtaaaatatgtctgtacctatttctttctatttgtgTGCTTATAGTACCATCAACAAAAGTTGCTGAGATGAGATTTATACGAGTCACACACCCATGCCCATGCATTATATTGCAATCCGTGCGCCGGATGAATGCGTGACGTCACGGGAGGGAGAGGGTCGCTTTCACTTTCGGTTCAGTCGGTCTGACGAGCGGTCCTGCGACAGAGGGGCTGCACCCCCAGGGCCCCACTGTGAAACACGCAGACTCTGTCCATGGCTGCGGACACCAGGACTATCCAGGTCCTCCAGGTTCCCAGTGTCCTCCATGATGACCGGATGATTGACAAGCTGATGATTCACTTCTTGCGACCCCGGCATGGAGGAGGGGAGGTGCTGCAGGTGCTCTACCCAACAGGCACGCCTGGACAGGCCCTTGTGACCTTTGAACTGCAGGAAGtgGCTGATCGTGTGGTGCAGCGTCCCCACGTGTTGCAGCTGCAGGAGCAGAGTTTCCCTTTGAAGGTCAGCAGGGCAGACAGGCCTGAGGATAACTACCTGTTCCTGGAGGGCTCCTTTCTGAAGCTACGCGCAGTCAGGACTCGACTCCAACAGCTGCAGCTCGCCCTCCCCGGAGAGCAGGTGCGCGGCCCCCCAGCCCAGCACTATCCCCCACACCTTCCCTCTGGAGAGCAGGGCTCTTCCAGGATGCCCCGGCTCAACGGTCAGGCAACAGGGGCCGTATCCAAAAGCAGAGTCTCCCGGGAGCAGTACGATGACCTTGGCGCTGACACCGCTGTGAGCCATCACAGCAGCCACTCTCTCCACAATGGCAGAGGTCTGGGGTCCAGCCGTGAATCTCTGCACAGCCCCGCTGCCTCTGCTTCCACTCTCTCCTCCCCTGGTCTCTCGGGGGGCTCATCCTTTCAGTGGTCGGAGCCCTCCACTCCTTGGAGCCCCAGCCGGTATAGCAGGAACCCCCTGGAGGTCTCTTTCCCCATCGACACGAATACTCTCCGCTACGCCCAGAGCTTACAGAAGCAGGAGCTGCAAGCGATCCTGGAGCGACACGCTGTGCAGTTGAGGGTGAAGGAAGACAAAGAGATCAGCACCGTGACCCTGACCCTCGCCCAGGGCAGCCGGGACGCCGACCGGCACAGAGAACGACACAGCACCCTGCAGAGTGCCCAGGACCAGCTGTTGGACTTCCTCTTGAAGGTCAAAAAGAGTCTGCGCACGCAGGTGATCTCCCCCTTTGACGTCCAGCTGTCTCGTGCTCAGAGACTGGCTGATGTCTACAAGGTTCTGGTGGACCAAGTCGGGGACAGACTCCTGCTAGTGGGCCCATCCAGAGAGAGCTATGAGCTGAAGCAGATACTGCAGGGAAACATGGTCAGTTTGCCAGCAGCGGGGCGTCAGGGTAGGGGGGAGCGAAAGGCTACGTCGGTGATGAGGAGCTCCTCTCTGCCCCGACAGCCCAGCTGGACAGATGTCAGGGGACCCGAGCAAGAGTCCGCCAACGCCAAGGGATACTCTCCGGCCAGGTACCAgaaggagcaggagcaggagcaggggGCGGCAGGATCAGGCCCTTCCCTGATCAGAAACTCGTTCAGGAGGAGAAGCAACTCAGAGTCCCGCAAAAAGATTAAGACAGGGCAGGCGCAGGGCCTGGGCAGCCCAGtgggcacagacacagacaaagagGTCCACACTGAACGAGTGACAGGGAAACACAAAACAGGGATGCCAACCCTCAAGAAGACCTTGGGAAAAATTAACAATACACTTAGAAATACATCCTGGAAAAAATAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154087 lncRNA downstream 35049 13141868 ~ 13147672 (-) True G122897
TU154067 lncRNA downstream 113483 13068834 ~ 13069238 (-) True G122879
TU154065 lncRNA downstream 115094 13067221 ~ 13067627 (-) True G122877
TU154056 lncRNA downstream 130331 13052026 ~ 13052390 (-) True G122869
TU154042 lncRNA downstream 177386 13000841 ~ 13005335 (-) True G122858
TU154142 lncRNA upstream 99300 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 103004 13289041 ~ 13289249 (-) True G122945
TU154146 lncRNA upstream 103271 13289308 ~ 13289916 (-) True G122946
TU154147 lncRNA upstream 105089 13291126 ~ 13291819 (-) True G122947
TU154148 lncRNA upstream 106284 13292321 ~ 13292568 (-) True G122948
AMCG00002396 mRNA downstream 2946 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002399 mRNA downstream 30395 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002395 mRNA downstream 61438 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002398 mRNA downstream 80193 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002392 mRNA downstream 138358 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002403 mRNA upstream 10788 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002404 mRNA upstream 33571 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002405 mRNA upstream 52706 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002410 mRNA upstream 146958 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 191130 13377167 ~ 13384055 (-) True AMCG00002411
TU154046 other downstream 153315 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 153315 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1176370 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1309859 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1327830 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 463191 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1755223 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3650119 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4736415 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9899957 23085994 ~ 23153164 (-) True G124719

Expression Profile