RNA id: AMCG00002398


Basic Information

Item Value
RNA id AMCG00002398
length 1259
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00002398
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13094064 ~ 13102528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTATCCAAATCTCGTATGACAAGCTCAAGAGCTTTTTTGCGTACAGCATTATGAAAATagttaatgaaataaaagctaTTCTTACAACACCTGAAATCCACATAGACTACATCCTGCTGGTCGGGGGCTATGCTTCTTGCAAGTTTCTGAGAGAGGAGATCCGTCAGCAGTTCAGCAGCAGATGCAAAGTGCTGTGTCCCTACGACTCCCAGCTGGCCATCGCAAAGGGAGCCATTCTGTTTGGAAACGACCCCAAAATAATAGGGTCAAGAATCAGTGCCCTGACCTATGGCATTGATATGTGTTCAAAATTCAATCCTTTGATTCacaacccccaaaaaatgagagttaataaaaaaagagattaTGAATATTGTACTGAACTTTTTAAAAGATTTGTGGAGAAAGGTCAGTCTGTAGCTTGCAATGAAGTGTCAGAACATTTCTATTGCCCTGTAGATGATGACCAGAAATCAATGTTCTTCCAATTTTTcagcacagaaaagaaaaatgccaaaTATGTGGATGAGCCTGGGCTAAAGAGGATTGGGTCATTTTCTGTTCCAATGCCTGATATCAGACTGGGCAGAAGTGGCAGAGTGAGATTGGATGTCAATTTTggtttaacagaaataaaagcaacagCCACAGATTTGACATCAAGATACGTGGATACACGCAACTTATTCGacaatacttttaaaatcacCAATGGCACCACTTCGGGACCACATCCACAGGGTACTGCTTTAACGGAAAAACATCGGACGAAAACAGGCGTGTATTGTGGGGCAGCGAGTACGGCATCAAATCCTGTAAAACACCCACTTTTCAGCGAAAAACAAGAATTCATTGAATTCGGATTCGAGGCTGtgcataaatacaaatcactgAACTCAGCGGACGCGTCACGATTTCAGTTTTTccaccattttaaaatggaattatATAACGCAGCAGGTCTGGTTCCTCACATTACTTCAGACAGTCTGCTAATTGCTCTGGAGCCTGAGGTTGCCTCAGTGTGGTGTAAACAGCTCGCTGTGAAGGGCTTCCTAGAAGAAAAGAAACTAGAAGATTCTCCAAGAAACAATGGCACCATCAAAATCACATACAAGAAGTTTGTGTCACTTTTTGCTGAAAGTTTATGGGAGATAGGAGGCAGAATTGAGGCTTTACTGAGTACACCAGGCTTCAAAATAAACTACCTGCTGTTTGTTGGCGGTTACGCTTCAAGCAAATGTCTCCGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154067 lncRNA downstream 24826 13068834 ~ 13069238 (-) True G122879
TU154065 lncRNA downstream 26437 13067221 ~ 13067627 (-) True G122877
TU154056 lncRNA downstream 41674 13052026 ~ 13052390 (-) True G122869
TU154042 lncRNA downstream 88729 13000841 ~ 13005335 (-) True G122858
TU153975 lncRNA downstream 850150 12195920 ~ 12243914 (-) False G122801
TU154087 lncRNA upstream 39340 13141868 ~ 13147672 (-) True G122897
TU154142 lncRNA upstream 182809 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 186513 13289041 ~ 13289249 (-) True G122945
TU154146 lncRNA upstream 186780 13289308 ~ 13289916 (-) True G122946
TU154147 lncRNA upstream 188598 13291126 ~ 13291819 (-) True G122947
AMCG00002392 mRNA downstream 49701 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002389 mRNA downstream 96642 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002385 mRNA downstream 590038 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002383 mRNA downstream 833658 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 845118 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002395 mRNA upstream 15952 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 49061 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 49840 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002397 mRNA upstream 80193 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002403 mRNA upstream 94297 13196825 ~ 13213803 (-) True AMCG00002403
TU154046 other downstream 64658 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 64658 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1087713 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1221202 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1239173 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 546700 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1838732 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3733628 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4819924 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9983466 23085994 ~ 23153164 (-) True G124719

Expression Profile