RNA id: AMCG00002401


Basic Information

Item Value
RNA id AMCG00002401
length 1398
RNA type mRNA
GC content 0.66
exon number 7
gene id AMCG00002401
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13191029 ~ 13194076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGGGGATACAAGGGCAGCTCCACAGTGTGGACTGAGGCAGTGCAGGGGCTGTATCCCCCTGGAGACAGACGGACACAAGCAGCAGCTCTATCAGGCTGCCCTGGGAGTGCACAGTTACCCGGACCCGcacttttctctctgtctctctggctATCTCTccacctctgtctctgtcactaTCACTTTCTCTAATCCTGAGCCTCCAGAGGACCAGCTGTCCGGCACAGGCTCAATGTCTCAGGGGCTCCTGTGCACCAGCAGTGCCAGCTCTCCCAGCAGCCTGCCTCCCTGGTCCACCGTGGGGGCCATGGAACAGAGAGTGGCAGTGCAGGAGGGGGAgcgggaagaggaggaggagagggtggGGCTGGAGTCGGGAGGGGGCGGACCAGCATGCGTGCGGGGGGGGTGCAAGCTGAGCCGCCTGTCCTCCCTCAACTCCATCCTGTCGGTGGAGTGGCGGGCGGGGCGGGCGGGGCGATCCCCCAGGCTCATCGGGAAGTCTGGCCGCTGTGCGCTGCAGTGCCGGGGCCACGGCCGCGCGGGGGGGCTGCAGGACCCCTTCAATGCCTTCATGGACATGAGCTGGCCGGCCTTCCTGTTGACCTTCGCCCTGGTGTTCGCGGGCAGCTGGACCGGCTTCGCCTTGCTGTGGTGGAGCATTGCTGACCGCAGGGGCCACCCCAGCCCTGACCCCCACGGCCACAGTGACccctccccgcccccccccTGTGTGACGGCGGTGCACTCTTTCTCCTCCGCCTTCCTGTTCTCCCTGGAGACCCAGACCACCATTGGCTACGGAGCACGCTCAGTGGCGGCGCACTGCAGAGAGGGCAtcctgctgctggtgctgcagGCGCTGGCCGGCATCATTATCGACTGCACCatgGTGGGTCTGATGTACACGAAGCTGTCCCGGCCGGAGAACCGTTCACGCTCGGTGCTGTTCAGTAAGGTGGCGGGCGTGGCACTGCGGGGGGGGCAGCTGTGCCTGATGTTCCGCCTGGCAGACCTGCGCAGTGGCAACAAGATCGTGGGTGGCAGGGTCAGCGCCACACTAGTGCGGAAAGAGGTCACACAGGAAGGCGAGGTGCTGCCGTTCCACCACACTGCCCTGCCGGTGTTTGTGGACGAGAGCGGAGACACGCCCTTCCTGCCGTCACCACTGTGCGTCACTGTGTGTCACGAGATCTCAGAGTCCTCGCCTCTCTATCACACCTCCGCGCAGTCCCTGCCCCAGGAGCAGTttgaggtggtggtggtgttcgAGGGTGTCTCCCAGCATCTGCGCAGCCTGTCCTGCTCCACACAGGGCTCCCTGGGAGGGGCGCACCCCCACACACTGCCCCCGCCCTGGCTGCACGAGCAGGAGGACGAAACCCCCTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154108 lncRNA upstream 1167 13189282 ~ 13189862 (+) True G122914
TU154105 lncRNA upstream 2751 13187949 ~ 13188278 (+) True G122911
TU154064 lncRNA upstream 123394 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 138639 13052025 ~ 13052390 (+) True G122868
TU154049 lncRNA upstream 139058 13031776 ~ 13051971 (+) False AMCG00002390
TU154127 lncRNA downstream 110621 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 351988 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 372338 13566414 ~ 13570811 (+) True G123041
TU154277 lncRNA downstream 378443 13572519 ~ 13590681 (+) True G123043
TU154415 lncRNA downstream 1159321 14353397 ~ 14361536 (+) False AMCG00002437
AMCG00002400 mRNA upstream 49442 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002393 mRNA upstream 61380 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002394 mRNA upstream 100646 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002387 mRNA upstream 105951 13071426 ~ 13085078 (+) True AMCG00002387
AMCG00002388 mRNA upstream 120197 13044693 ~ 13070832 (+) True AMCG00002388
AMCG00002402 mRNA downstream 34451 13228527 ~ 13237405 (+) True AMCG00002402
AMCG00002408 mRNA downstream 77605 13271681 ~ 13304556 (+) True AMCG00002408
AMCG00002409 mRNA downstream 113921 13307997 ~ 13328399 (+) True AMCG00002409
AMCG00002406 mRNA downstream 175235 13369311 ~ 13373738 (+) True AMCG00002406
AMCG00002407 mRNA downstream 181504 13375580 ~ 13376288 (+) True AMCG00002407
TU154081 other upstream 61332 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 129344 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1050564 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1354860 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1496864 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3764085 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4721360 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5637938 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5936327 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 7080013 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003564 True 1008 mRNA 0.60 1 NC_007121.7 158590 ~ 159597 (+)