RNA id: AMCG00002402


Basic Information

Item Value
RNA id AMCG00002402
length 1848
RNA type mRNA
GC content 0.60
exon number 17
gene id AMCG00002402
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13228527 ~ 13237405 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTAAGCGTCCTTTTGCCATAGCCAATGAGCGGGATCTGTACGAGAGTATCCTGAATGATCCAGTGCCATTCCCCCAGCACCTGTCAAACGAAGTAGTTTCCATCATGACAAGGAGTGTGGATTGGCCTGGGCTGGAGGCACAGAGGGTGACACTTCCGTTTGCCACACTGTCAGAGACCACGAGGCTGGTCTTCAGCCCGGAGGAGCAGGACATGCTCCTGGAGTTCAACTTCATCGCGGACTGGTATTATGGTATGAAGGCCCTCGACACTCAAGACCATGAAATGCCATCGCTGACCGTAGCTCACAGCCATCCCTCCGAGAAGAGTAGAGAAGCAGACAGAAGGGGAGCCACAGACAAGCTGagtgtcagtgcgCCGGTCTGTCCTCTGAGCCTGCGGTCAGTAGCGCGGAGGGTGATGCTGCTGTCCTCTGTCACtcgcaccctgactggtctggcGGAGCGGGCGCTGGGGTTCAGCTACTGGGCAGACCAGAGGCAATGCTATGGCACACCCACATTCCGGTTCCCCGCACGGGCGCTGCGTGTGGCACTGTGCCCGGAGGCGTGGCGCTCAGAGGAAGACAGAGGCAGCAGTTTCTACTTTGTGTTCTCTGGGCTCATCGCTGTCACTCAGGATTTGGATGGAAGCTCCGCCTTCACCGACCCGGAGCCAATCCTCATGAGGAAGGGGGCGGGCTTTGGTGACACCGAGCTACTGGCCGTGGACAGAGAGGACTTCTTCAACCACCAGCTGGACCAGGAGCTGCGCAGAGAGGAACTGGATAGAAAGCTCTACTTCAGGTCCCTACCCCTATTCTCCAGCTGGTCAGACAAAGCACTGGAGACATTGGCTGACCACTGCAAGACAGAAGAGGTCCCTCACGGCCaactggtcctgagagacagcAGCACAACCAGCAACCTGGTCTTCATCACCAAGggACAGTGCAGTGTGCTGCGTCTGGTGGAGCTGAGCCAGTGCCCATCTTATCACAGGTGGATCAGGCAACAGGAGGCGGTCCAGTGGAAAGTGCAGGGCAGGGGACTGGCAGaaaaaaagagaacttCCCCTGCCAACTCACCTGCCTCCGTGGCCCAGCTCCAGGATCTGTTTCCCCAAGTCTCTATCCTACTGGATGCCCAGGCTGTGGGACCCTGGGAGGCAGGGGAGCAGCTCCCCATCAGTGGGGGGACAGGAGCAAGCCAGGACACCCCCATGAAGTTCAGGGAGGGAGCCAGTGGGAGCACGGGGGTGGCAGCAAGGAGTCTCCCCCAGGAGATGGATGCAGGGGTCTACTTACGAATCGACTCACTGAAGCCCGGACAGCATGTTAGGGCAGTAGACGTGCAGCAGATCGAGAGCTTCATGGAGAGAGATGGTCGGATGCCACTGGAGGGAGAGCACCCCCACTGGGCTACACCACCACAAAGCATGGACCCCCGCGGTATGGTGGTGGTCAGCCAGGGGTCACAGGTCATCCGTGTGAAACTGGACAAGTTCAGCGAGCTGGCGGACTGGGAGACCGTGGCCAGGTTGCAGAGAGAGGCCCAGCCCTACCCCAGGTACAGCGCACTGCCACTGAGAATAGCCCAGGCAGGTGACCCTCCTTGCCGCAGTGACGACGAGCTGTGCCAGGTCTTCCTGGAGCAGAACCGCTGGCGCGTGTTCAAGAGTGAAGTGCTGAGCACGATCCGACGGGGCGGGGGCCTGAACAGCCCGGGAgccaggaggaggagagagagggggaagagcaGGGAGAGGAGCGGAGAAGACGAGGCCCTGCGACTCATCCATGCCATCGCCATCCCCAAATCATACGAGACGAGACGCACCTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154108 lncRNA upstream 38665 13189282 ~ 13189862 (+) True G122914
TU154105 lncRNA upstream 40249 13187949 ~ 13188278 (+) True G122911
TU154064 lncRNA upstream 160892 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 176137 13052025 ~ 13052390 (+) True G122868
TU154050 lncRNA upstream 195536 13031776 ~ 13032991 (+) True AMCG00002390
TU154127 lncRNA downstream 67292 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 308659 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 329009 13566414 ~ 13570811 (+) True G123041
TU154277 lncRNA downstream 335114 13572519 ~ 13590681 (+) True G123043
TU154415 lncRNA downstream 1115992 14353397 ~ 14361536 (+) False AMCG00002437
AMCG00002401 mRNA upstream 34451 13191029 ~ 13194076 (+) True AMCG00002401
AMCG00002400 mRNA upstream 86940 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002393 mRNA upstream 98878 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002394 mRNA upstream 138144 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002387 mRNA upstream 143449 13071426 ~ 13085078 (+) True AMCG00002387
AMCG00002408 mRNA downstream 34276 13271681 ~ 13304556 (+) True AMCG00002408
AMCG00002409 mRNA downstream 70592 13307997 ~ 13328399 (+) True AMCG00002409
AMCG00002406 mRNA downstream 131906 13369311 ~ 13373738 (+) True AMCG00002406
AMCG00002407 mRNA downstream 138175 13375580 ~ 13376288 (+) True AMCG00002407
AMCG00002412 mRNA downstream 151780 13389185 ~ 13406063 (+) True AMCG00002412
TU154081 other upstream 98830 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 166842 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1088062 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1392358 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1534362 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3720756 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4678031 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5594609 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5892998 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 7036684 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile