RNA id: AMCG00002404


Basic Information

Item Value
RNA id AMCG00002404
length 2858
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00002404
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13219608 ~ 13227144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATAACTATGCGACCACGGCAGTCGGTAGCAACCCATGTGAATGTCGCTTGTGTAAATTGACAAGGCAGAGTGAGATGAGGCAACAGTTTGTCCTGTGGTGAAGTAGGCTGCAGTGCCTGCATTAATTTTCATAATGACATCACGACTGCTAGGCCGCTGTGCCCGACTGCTGGGGCAGTGCTCACAAGTTCCTGTGGCCTGGGTCAGACCCCTGGCCCCTCCTGCCCTGGCAGAGCCCCTTCCTGCTCTGGCCTTGCGCTTGCCCACACCTTGCCCATGGCGGACACTGTGTGTAGCAGTGGATGAGGGGTACCAGCCGGCACCTGATCGCACAGAGCTGGATCAGCTGCTGGAGGGGGCGGGCACCCCTGGGGAACTGCTGCAGGTCTGGGAGGAGCACAGGGGCACTGCCAACCAGGCTGCCAGTGCCCTCACCCAGCTGGCACGCCTCACCATAAGCAAGGGGGTCAGAGACAAGAGGGAGATCACCGACAACACTGAACTCTTCCTTGACCCTCGCTTCCAACATCTGCTGCAGACGGTCAACTCCCAGGTGTCCACAGTGTGGAATGGCTCCCTGGTGGCGTTGGTGCGGGCGCTGTCTCAGCTTGGCATGTCCCCTACAGCCCCGGCCCTGCGCTCACTGCAGACCGAGGCACACTGGCGCCTGCGCAGACTGAGCTACAAGCAGCTGGCCGTGCTGGCGGACTGGGGCAGCATAAGGCAGCGCGCTGGCCAGGAGGGGGCACTGCTGGGAGATGTGCTAAAGCAGCTGGAGCTGCGCTGGACGGAGATCACAGAGCCCCGGACCCTCGCCCTGCTCATGAGCCACGTGGGGCACCTGTCACCCCCTCTCATGGAGCGCCTGGAGGACAAGgctCTGGAGTTGGCGGAGCGGTTCAAGCCAGAGGACATGCGACGTGTTGCCTTGGCGCTGGCGGTGGGAGGGAGGCGCTCAGTGCCGCTGCTCAGGGCGCTGTCCTACCACCTGTTGCAGAAACCGGGCCTGGAACTGCCCACGCCCTTGCTACTGGACCTGGCCTTTGCTTatgGGAAGCTGAATTTCCAGCAGACCCAGCTGTTCCAGCGCATCGCCGCCGAGCTGCTGCCCAGGCTGCCCGAGCTCAGCCCCAACCAGGTGGTGCGCTGTGCCAAGTCCTTCACCTTCCTCAAGTGGCTCCACCTGCCGCTGTTCGAGGGCTTCACTGAGcaTTTCCTGCAGCACAGTGAGAACTACAGCGCCACCCAGCTGTGCAACCTCATCATGGCATTCGCTCGCCTCAACTTCCAGCCCAGCCAGGGGGACGCCTTCTACAGCAAGGTGATGTCCAAGCTGGAGGGAGTGCTGCACCGCCTGGCCCCTGTGTTGCACATGGATGCGGTGTGGtccctgtgtgtgctgcagcAGACTCGGCCTCAGCTCCTGCGCCCCCTGCTGGAACCCAGCTTCCACTGCACCCTGACGAAGGGCAGCCCCTCACACTCTGAGGGATACAGGCTGAAGCTCCTCCACATCGCAGCCGCCCTGGAGCTGGAGTGTGGGGAGCCCCGGGCCGCCCTCCCTGCCCCTtacaccaccacccccaccaccacccgtGACAGCCGTCCGTCGACGCTCCAGACCAGCCTACAGGAGGCGCTGCAGATCCTGACAGGGGGGGAGGAGGGAGCGTACCGCACGGCTGTTAACACGGTGTATGGCTGGCCCATCGATGGAGAGCTGGTCCTGGACTCGGAGAGCAAACCTCTCCGTCTGGACAACCTGAGTGCCCCCCACCTACCTGGGGGCGGCGGGGGCACTCCTCTGCCCGAGGGGGCCAGGAGgataGCAGTGCTGGCGAGGGAGTTCCCTCACTACAGCTCGCGCAGCAGGGAGCTGCTGGGCCGCTATGTCATGCAGCAGCGACACCTGCGCTTGGCCGGCTTCCTCACTGTGGAGGTGCCGTACTTTGAGTGGCTAGAGCTGAAGTCTGACTGGCAGAGGGTGGCCTGCCTGAAGGATAAGATTGGGAAGGTGGTGGCAGAAGAGATGGCCAAGTAGAACCTGGACTGTCTGCAATCTTTTGACAAAAGCAAATtcccacaaaaacaacacaacgaCAACTCAGTGAAtccaaaacaacagcagcagcagcagcagcagcagcagcagctctaTCAGCAAGAATAACATAGATTTGTGAGCCCCTGTCTGAGGGCGTCCTGGCAGCCCTTGCAGATCCATTGTCCGGACTTCTGGTCACCTAGACAACCATCTGGGGGCATTCCCTCTCACCATGGAGACagctgcgggggggggggggggggggggagtgtgcCAAGAGAACAGCTCGGCACAGCGCAGAGTAAGTGGGTGTAGGAGGCTGTGTCGAGGGGGGAGGTGACTAGCTGGAGCGGTGAGGTGTCCCTGCACCCCCCTCTCGGTGTCAGAGTGGGGGGGTGACGTGTGTTAAGTCCCCGTGTTCCCAGGCAGACAGTGAGCTGATGTTTTGTTGGCTGTAGAAATAAAGCGAAAGGGATTTGAAACACTGCAGCTCTCAGGGCTTCGGTCATCCACAGAAACCTCACAGGACTGATTCTAAAAATGGGATTTAGCTGCTGTCTAAGGTGCAGTGCTAGTAACAAATAATCGTCATAATAAAAAAGCtagtatttaatttgcattggtATCgcagtgttttatttcatcTCTATAACCCTCCAGCCAGTCGGGTCAGGGGCTGGGGGCTGGCACTTGTTCTTTCTGTGTTGTCATTGGGGCTTGTTTCGATTTTGCTCACAGGAGTGAAACTGTCCCCATGTTGTAGTAAGTGGGCCCgtttcatttttaatgctgCACATTAAAAAGTACACCATC

Function

GO:

id name namespace
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154087 lncRNA downstream 71936 13141868 ~ 13147672 (-) True G122897
TU154067 lncRNA downstream 150370 13068834 ~ 13069238 (-) True G122879
TU154065 lncRNA downstream 151981 13067221 ~ 13067627 (-) True G122877
TU154056 lncRNA downstream 167218 13052026 ~ 13052390 (-) True G122869
TU154042 lncRNA downstream 214273 13000841 ~ 13005335 (-) True G122858
TU154142 lncRNA upstream 58193 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 61897 13289041 ~ 13289249 (-) True G122945
TU154146 lncRNA upstream 62164 13289308 ~ 13289916 (-) True G122946
TU154147 lncRNA upstream 63982 13291126 ~ 13291819 (-) True G122947
TU154148 lncRNA upstream 65177 13292321 ~ 13292568 (-) True G122948
AMCG00002403 mRNA downstream 5805 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 33571 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 39833 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002399 mRNA downstream 67282 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002395 mRNA downstream 98325 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002405 mRNA upstream 11599 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002410 mRNA upstream 105851 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 150023 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 179208 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 187156 13414300 ~ 13430384 (-) True AMCG00002416
TU154046 other downstream 190202 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 190202 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1213257 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1346746 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1364717 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 422084 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1714116 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3609012 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4695308 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9858850 23085994 ~ 23153164 (-) True G124719

Expression Profile