RNA id: AMCG00002405


Basic Information

Item Value
RNA id AMCG00002405
length 610
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00002405
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13238743 ~ 13249851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGCTCTCCGGACTCCCAGCAGGGTGCGTAGCCAACAGGAACACCCTGAGCGGGGCAGCTCGATTGTCTCTGCGCTCGGCTGCCTTTGCCTGCATCGATGCAGTCGGTGCCGATGCCGACGCGCGGGGCATTGTGGGAAGATGGAGCGCTCCGTGGGCTCGCTGCAGGAGCAGGCGctgaagaggaaggagagactCAAGGCGCTGAGGAGCAAACAGTTGCAGGGGAGGGAGCCTGAGGATGGGGAGCCGGGCAGCAAGAGAGcattgggagagagagaggaacagcagcagcagcaggaagaagaggaggagaaacaCAGGGAGCTGAAGTTGAGGAACTACACTCCTGAGGATGAAGAGCTGCGGGAGAGACAGGTGCCCAAAGCCAAGCCAGCCTCAGtggagGAGAAGGTGAAGGACCAGCTGGAGGCGGCGAACCCCGAGCCAGTCATCGAGGAAGTGGATTTGGCTAATTTGGCTCCCAGGAAGCCTGACTGGGACCTGAAGAGAGACGTGGCCAAGAAGCTGGAGAAACTGGAGAAACGGACGCAGCGCGCCATCGCAGAGCTGATCCGTGAGTGCATGCGCCAGTACAGTGTGCCGTGA

Function

GO: NA

KEGG:

id description
K12871 CCDC12; coiled-coil domain-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154087 lncRNA downstream 91071 13141868 ~ 13147672 (-) True G122897
TU154067 lncRNA downstream 169505 13068834 ~ 13069238 (-) True G122879
TU154065 lncRNA downstream 171116 13067221 ~ 13067627 (-) True G122877
TU154056 lncRNA downstream 186353 13052026 ~ 13052390 (-) True G122869
TU154042 lncRNA downstream 233408 13000841 ~ 13005335 (-) True G122858
TU154142 lncRNA upstream 35486 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 39190 13289041 ~ 13289249 (-) True G122945
TU154146 lncRNA upstream 39457 13289308 ~ 13289916 (-) True G122946
TU154147 lncRNA upstream 41275 13291126 ~ 13291819 (-) True G122947
TU154148 lncRNA upstream 42470 13292321 ~ 13292568 (-) True G122948
AMCG00002404 mRNA downstream 11599 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 24940 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002397 mRNA downstream 52706 13182721 ~ 13186037 (-) True AMCG00002397
AMCG00002396 mRNA downstream 58968 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002399 mRNA downstream 86417 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002410 mRNA upstream 83144 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002411 mRNA upstream 127316 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002415 mRNA upstream 156501 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002416 mRNA upstream 164449 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 208632 13458483 ~ 13478876 (-) True AMCG00002417
TU154046 other downstream 209337 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 209337 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1232392 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1365881 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1383852 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 399377 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1691409 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3586305 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4672601 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9836143 23085994 ~ 23153164 (-) True G124719

Expression Profile