RNA id: AMCG00002406


Basic Information

Item Value
RNA id AMCG00002406
length 1773
RNA type mRNA
GC content 0.65
exon number 11
gene id AMCG00002406
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13369311 ~ 13373738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttaattccctctTCTCTCTGGTTGTGTAAAACGGAAACCGAAAGAAAGGCGACTTCCTGCTCGGCTCCCACAGCAGAGCACCACCCTCCCCCGCCGTAATCAGCGCGGCTCACCCCGGACGGAGAAGGAGGCCGTCGTGGCTCTCCGGGTGGAGCAATGCGGGTTCGTTAGCGCACGGAGCCGGTATTTTGTTCAGCCGGACAGCGGTGCGTCTGCGAGGAAGGCGCGGGAAACGTGTCCGCTCGGCCGGGCTCTCCAGAACAGGCGCATGACGTCACCCAGGTGTTTTGCACACAGCCTGCCCCCTGTGGTGTGAGGCCGTGCCCCCGAGTTTCCCCCCTCAGCGTGCCGGGCAGCATGTCGACTGTGTGGCTCCATGTGGGTCAGTGTGGGAACCAGCTCGGGCAGGAGTGGTGGCGGCTGGTGACGGAGAGACCAGGCCTGGACAAGACAGCAGACAGgtaCCCTTACAGGGGCAGAGATGGGAAGCTGGCCGCAGTGTGTGTGGACAGCGAGCCCAAGGTCCTGCGTGCCACTCAGAAACTGGTGCAGGGGGGGAGCCTCAGGGAGTCGAACGTCATCGCGGGGCAGGGAGGTCGTGGCAGCAACTGGGCTtacgGTTATCATGGGCAGCGGGGTGAGGGGGAGCGCGGGCTGCTGCAGCGCGCCATGGAGAGTGTGCGCCTGGAGGCGGAGCGGAGCGACTGCTACTGCGGCACCGTGCTGTTCCACAGCCTGAGCGGGGGCACGGGGGCAGGGCTGGGAGCTCGTCTGTGTGAAAAGATCACAGATCACATCCTGTCCGTGTCGGTGGCGCCGCACCAGAGCGGAGAGAGCCCTCTGCAGCACTACAACACCCTGCTGAGCCTGGCTGCGCTGCACAGTTCTGCAGACGGGCTGCTCCTGTTCCACAATGATGAGGCCCTAAGCCAGGCGCTGGCTGTGCAGACTCGGGGCCGGGCCGGACCCCCAGGCGCCCCTGCCCAGACCTCGCTGGCAGCCATGAACTTGCACATCTCCTCCTGCCTTGGAGGTCTGCTGTTGCCGGTACACAGTCTCACCACAGCCAGGTACCTCACCAATAGGAGGCAACATCGGGCTTCTGAGGAGAAACCGTGGGACTGGGGGGGAGGGGACCGGGGAGGTGtgctGCACTCATGGCTGTGTGCTCTCCGCAGTGGGCTGAGTCTGGGGCTGGAGCCCTGGGAGTTACTGAGGTCCGTCTGCCCCCTCCCTGCCGCCAAGCTCCTGCACACCAGCCAGGCCTGCAGCAGCGACGCCACTCCCTGGGAGAGCCTGGCATCTTCCAGCCTCAAGACTGTGCCTCCAAACTCCCCCTGTGGGGAGCCATACCACAGCAGGGCAGTCCTTGCGGTCGCCCGGGGAGACCGTGATGGTTCCTTCCTGTTGCACGCGCCCAGAATCCTCCACAATCTGAGGCAGGGCCACCGCTGTGTCCCCTGGAACCCCTTCCCAGTCGACTACTGGACTGACCCCCGGAGTGTCCTGAGGCGCCATCCCTCCCCGTCCTCGCGCTCCCTGACAGTGTGCTCTAACCACAGTGGGGCGGCCGCCCTGCTGCGGCGCGTGGACGAGCGCGTCAGGGTCATGCTTCACAGCCGGGCCTACCTGCACTGGTACCAGCGGTACGGCTGCGAAGAGAGCGACTTCCTGCAAGCGCTGGACACCCTGAAGACCGTGGAGCAGGAGTACAGCGTGGGGGCCAGGGGGCTCTCCGTGGGGGACACTCGGGGGGTGGGGATTTGA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154127 lncRNA upstream 63712 13304697 ~ 13305599 (+) True G122929
TU154108 lncRNA upstream 179449 13189282 ~ 13189862 (+) True G122914
TU154105 lncRNA upstream 181033 13187949 ~ 13188278 (+) True G122911
TU154064 lncRNA upstream 301676 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 316921 13052025 ~ 13052390 (+) True G122868
TU154271 lncRNA downstream 172326 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 192676 13566414 ~ 13570811 (+) True G123041
TU154277 lncRNA downstream 198781 13572519 ~ 13590681 (+) True G123043
TU154415 lncRNA downstream 979659 14353397 ~ 14361536 (+) False AMCG00002437
TU154427 lncRNA downstream 991298 14365036 ~ 14366335 (+) True G123169
AMCG00002409 mRNA upstream 40912 13307997 ~ 13328399 (+) True AMCG00002409
AMCG00002408 mRNA upstream 64755 13271681 ~ 13304556 (+) True AMCG00002408
AMCG00002402 mRNA upstream 131906 13228527 ~ 13237405 (+) True AMCG00002402
AMCG00002401 mRNA upstream 175235 13191029 ~ 13194076 (+) True AMCG00002401
AMCG00002400 mRNA upstream 227724 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002407 mRNA downstream 1842 13375580 ~ 13376288 (+) True AMCG00002407
AMCG00002412 mRNA downstream 15447 13389185 ~ 13406063 (+) True AMCG00002412
AMCG00002414 mRNA downstream 57098 13430836 ~ 13439194 (+) True AMCG00002414
AMCG00002413 mRNA downstream 67199 13440937 ~ 13455498 (+) True AMCG00002413
AMCG00002418 mRNA downstream 116440 13490178 ~ 13511283 (+) True AMCG00002418
TU154081 other upstream 239614 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 307626 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1228846 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1533142 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1675146 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3584423 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4541698 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5458276 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5756665 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 6900351 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile