RNA id: AMCG00002408


Basic Information

Item Value
RNA id AMCG00002408
length 8477
RNA type mRNA
GC content 0.61
exon number 48
gene id AMCG00002408
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13271681 ~ 13304556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCAGTCAGTTCCTGTGCTGAAGCAGGTTCAATATGCGCAGGAGACTCCCAGGCGGCAGCAGCGTGTCACTGGCCCTCATGAGCACAGCCCCGGCAAAACCACACAGACGCAGCAAGATAACATCAGCCCTGCAGCAGCGTCAAGCTCCGCGGCACGGCCAGAGGAGTCGAGCTCCGAGATCCCCCTGTTGCCCCGGGAGGTGCTGGTGCTGCTCAGTACGCAGCTGTGGCACAGCGCCCTCCAGCTATCAGGCCAGGAAAAGCAAAGTGCTGCCGCCCACCCCTTGCTGCTCATCAAGTTTCTCATCATCATCTGCAGGAACATGGAGAACATTGACCCAGACAGGACACCTGGCTTCGTGTTTGAGACCATCAAGCTGCTGTCCTTCTGTATGGCACAGcTGAAGAAGCAGCCTGAGGACCAGGAGCAGCTGGCATCTGTGGTGCTGCACGGCCTGCTACTGCTGGAGAGCCTCTTCGACCCCTATCAGACCTGGAGGAGACAGCTGGCTGGAGAGGAGGTCAGCCTGCTGGAGCGGAGCAAGTACAAGTTCTCCCCGCTCCCCCTACCAGAGGAGTTGCCTGCTTTCTTCCACGAAAGCCTGCAGGACAGCGAGAGGCTCCCAGAGCTACTCAGGCTGCGACTGGTCCATCTCCTCGGTGCAGTCATCAGTGGCAGCAAGAAGAATGGCCTGGCGTCCATCACACCTGTGGCAGTAAACGACCTCATGCACATGCTCACCTCCTGGTGTGAGCATGGTGCTCCAGAGCACAAGGACCCCCAGCTGCTTTGGATGACCTTGAAGTCCCTGACTACGATGATCCACCTCCTGCATGCCAGCAGCCTGGACCAGCGGCAGGTGGACATCAGGACTGTGCTGGAGAGCTATTTCCGACTCCTGAACTGGGACCGGCTGCCCAGCAGCCAGGGGGAGGGGCAGGGCGGGCACTGGGAGGACAACCTCATCACCCTGCGCACACACATGCTGAATGCCATTCCAGAGATGCTGAACTGCGCTGACCGGCCGGTGCTGCAGGCCATCTTCCTCAACAACAACTGCTTTGAGCACATCCTGCGGCTCGTCCAGAACAGCAAGCTCTATGAGAGCAGCGTGTATAGGCCGGACGGCGAGGGCGCATTCGACCTCACCACCCACTTACTAACCGAGATCGATGTGGACCAGgtgTGGGAGAAGGGCTCGGACTCAATCACAGTGCACGCCCTGGGGGTCCTCACTGCCATCATGAGCAACTCGCCCTCTGCAAAGGAGGTTTTCAAGGAGAGGATTGGCTACTCCCAGCTGTTTGACGTGCTGAAGAGCCAGGGCCAGCCAACCAGGCGGCTCCTACAGGAGCTGATGAACATGGCAGTGGAAGGGGACCACTCTCAGGCAGTGGTCCTGGGCATCAGCAATGACCAACccctactgctgctgctgcagtggATCCCAGAGCTGGAATCGCGGGACCTGCAGAGGCTGGTGGCACAATGGCTGGCGGGGTTATGCGGGGGCTCACTGCCCTGCCGCACGACCACTGTGGAGGCCGGCATGGTGGGCGCGGTGCTAGAGGTGCTGTCCCAAACGGAGCGTGTGGACAGGCAGTGTGCTGAGGCGCTGCTGGGGCTGCTGCAGGCCCTGGGCTCCCTCTCACTGCGCCCTGGTGAGCTGAAgagactgctgctgctactgagGGTGGAGCCAGGCGCCGGGACGAGGGTGCACCCTTACTGCGGGCGTGTGGTGCGGGCTCTGTCGGCCATGGCACTGCGGGAGGGCCGAGACGGCGCCCTGCAGTACTTCGACCTCAGCCCCAGCATGGCTGGCATCATGGTGCCCACCATCCAACGCTGGCCAGGGAGCAGCTTCGCTTTCCACGCCTGGCTGTGCCTGGACACTGGGAGACAGGTGTCGTCCGTGCCAGAcctcacccccaccacccccaccactcCCACCACCCCCACCGCTCTCAGCGCCCGCTTCACCAAGGGGCCACGCCGGAAACAGCTGTACAGTTTCTTCACTGCCAGCGGCACTGGGTTCGAGGCGTTCTTCACAGCGGAGGGGGTGCTGGTGGTGGCAcaCTCAGTCGATGTGGTGCACATCCCCGGCCGGCGGCCGTTTGGTCAGAACCTGGTCAGTATCTATGTGGACGGAGTCCTGTGTAGGACGGCCCAGCTCCGTTTCCCCGCACTCAATGAGCCCTTCACCTCCTGCTGCATTGGCTCTGCTGGGCACCggaccaccaccaccaactCGCCCACACTGCCgctgcccccccagcccccgcCCGAGCCCACCTTCCCCAGCCCCTCTCCACTCATACGCTCCATGTCCTTCCCGGCCTCCCTGTCATCTCCAAGCTGGGCCCCGCCTACCTCCCCCCCCGTGGACACGCCTGTGCACACCATCCCCGCCGGGATGCAGGACATGGAGTGGGGCTCCCCCACCTCCCTGGAGGGGCTACTGGGCACCACCTTCATCTGCCACGAGGCCCTGCAGCCGGCGCAGGCCCGCATGCTGTTCACTGCAGGGCCCAACAACGTGTCCCTTTTCAAACCAGATGGGGAGCTCTCAGACCTCAACAGCAAGCTACTGCTGTACTACACACCCAAGGCCTTTAAAAACCAGATCTGCCTGGACCTGTCTCCTGCTCATCAGTATGATGGGCGGCTCACTGGCCACAGGGTCATCAACTGGGACGTCAAGGATGTGATCAACTCcgtgggggggatgggggtgcTGCTGCCCCTGCTGGAGCAGGTGTGCgacctggaggaggaggagggagggggcagcCAGGAGACGTCTGACCTGCTGGGGCCCGAGCTGACCTCTGCGCGGGGGAAGGCCAACATGCTGCTGCCCCTGGGAAAGTCCTCAGAGGGCCGCCTGGAGAAGAACAGTGTTGCCGCCTTCCTCCTGATGGTGAAAAACTTTATGCGTCATCACCCGGCCAATCAGGAGAGCCTGCTGCAGTGCCACGGCCCCGCCATCATCGCAGTCATGCTCAGCAAGGTGTCCAGCACACGGATGGACATGTCCGTGCTGATGGCGTGCCAGTTCCTGGTTGAGCAGGTGTCCAGCGAGGGCAACAGCACGCTGCTTACCCAGCTCTATCAGCACCTGCTGTTCGACCTGCGCATCTGGAGCAGCAGCCACTTCGCCGTGCGCCTCGagcATGTGCAGTACCTGTCCACCGTCATCAGGCAAGGGAAGCAGCGGTTCCGCAGGAAGTACGGAGTGCAGTACATCCTGGACTCCATCAGGACACATTATGGTGTGGAGCGAGACGGTGGCCCCCTGTCTGACGAGCTGCGGACGGTGCAGACTGCGCTGTTCTCGCTGCTCAGCGAGTTCCTGGCAAAGTCGCCCACCCCTGAGGAGCTGCACAGTGTGCTGGCCTACACAGGCGCCGTGGGTGAGGAGCAGCAGATGATCAGTGTGCTGGATGTGCTGTATAGTCTGCTGCGCCCCCCGCCCCTCCGGGAGCAGCTGGTGTTGGTGCTGCTGGAGAATGCGGCTGAGCCCTTCAAGCAGAAGCTGAAGCTGAGGGACTGTGGGTACCTGGGCCTGGTCTGTAGCCTGGGTGATGCCCCCGTCACACTGACAACCATCCGCTGCCTCTACGAGCAGCTGTTTCACTTGATCTACTCAAGCGAGGACAATGTCAGGCAGCTGGCACGGCAGCTCGGCTGGCAGGACACACTGACCAAGCTGTACGTGAAGGAGTCATACGAGTCCCGCGCCACCAGCTTTTCTGACTCCAATCCCAGCTCCTTGGACAGCTCTCGGCCCAGCCTCCAGAGACAGGACAATGTGGTACTAGTGGAGACGCCCACCGATGTCTTCCCAACATTCagaatggaggaggaggaagaggaggtcAAGGCGCAGAAGGACCCTCAAGACATCTCGGAGGGTTTCTCTGACATGTCCCTGTCCCCTGTCAACGGCAGTCAAATGAAGAGCTTAGCCAACTCCATGAACTTCAAGTCCTTTGACTCGATGGAGCTGGCCAGCCAGTCGTCCTCGCAGTCCAACGCTGTGGACATCCCCACAGTCCAGTCTGACTTTGACCAGGGCCCCTACCTACCCCTGTCCCCCTTTGGCAGTTCCCCCTTCGAACTGGGGCTGGAGCTTGGGGAGGGCACGGGCTCGCAGACCCCTGTGAGCCAGGCCGACACACCCTCCCCCCTGGAGACCTGCAAGCCATTCCCCGGCCTGCGGGCGCGCAAGAGCTCCAGCCTGTCCAACGTGCTGGACGACAGCAGCTACAGCACTGAGCACCTGCCTGGGGACAACACCTCCAACACCTCCAACCCACAGCAAACCCCAGAGGAGGAGCTGTGTAACCTGCTGACCAACATCGTGTTCTCAGTGCTGTGGAGTGGCGTGGAGGGCAGCGAGGACGCTGTGTGGCGCGAGCGGGGGCAGGTCTTCTCCGTGCTCACCAAGCTGGGCTCCCACTGCCAGCTGGTGCGCCCCCCTGACGATATCAAGCGCAGCCTGCTGGAGATGATGCTGGAGTCCTCCCTGTCAGACCTGAAGGACGCTATGGGCGGCGCAGTCTCTGGACACGGCCTGGCCATCGTCAGGCTGCTGAGGCTGCTGCAGGACTTCCTGTTTGCAGAGGGCACTGACAACCAGGCTCTGTGGAGTgagaagACGGTGCTGTCCCTGGACTGGGAGGAGGTGTGCTTCCTGCTAGGCCGTCTGGGGACCCCCTTGGCCAAGGCTCTGGAAGTGGGGGGGCGGACAGAGGCCTTCTCACAGCTTGTGCCCATCGTGCGCACCCTCTTGGATCAGCACGCCGACCCCCCTGGCCTGCGCGCCCTGCTGCCCGGCCTGCCCCCCACCAACGGCAGCGCCACCTTCGCACAGGACCTGCACAGCTACTGTGGCACCCAGGAGTGGCAGGACTTCCTCTCACACCACgtgCAGCCCACCATGCAGCAGTATGAAGAGGACAAGTTTGGGAAGAGTCATGATCTCATGTCTAACTTCTGGAACTCGTGCTTCGACGCGCTAATGAGCACCGCACAGCGCCGGGACAAGGACCGAGCACACTGCCGGGCCCGCTTCCAGgAGGTGATCGTGGAGCCCTGTGTACGGCGGGTGCGCAGTGAAAACGCACGGTACTTCAGTGTGCAGAAACAGGCCACCAGCCACCAGGGGTCAGTGCTGCGGCACTGGAAATCTCTGCACAGACTGCTCAGCAGCGAGAGGGGTGCCTGGGCCCTGCGggtgcaGTCCGAAGTGAAGTGGAAGGTGTCCAGCGCAGAAACCTACTCCAAGATGCGTCTGAAACTGGTTCCCAACTACAACTTTGACTCCCACCAGGAGGCCAGTGCTCTCAGAGACAACATGGGTACTGATAACCGCAACCAGACGGAGACACTGCCCCTCGCTGTGGCCAAGGAGGCCAAGGTCAGCGATATGGAAGACGATCAGCTCAACGACGAGGACCTGCTGCACCTAGACAACCAGgtggaggcagaggaggagagtCAGCGGGAGAAGCTGGTCCTGTCAGAGGACTGTGAGCTGATCACCATCGTGGCGGTGATCCCAGGGCGGCTGGAAGTCACTACACACCACCTGTACTTCTACGATGGCAGCAGCGACAAGGAGGAGACTGaggagggtgaggGTATCGGCTATGATTTTAAGCGCCCCCTGTACCAGCTACGGGAGGTCCACCTGCGACGTTACAATCTGCGGCGCTCTGCCCTCGAGCTGTTCTTCATCGACCAGGCACACTACTTCATCAACTTCAAGAAGAAGGTGCCCCCTCTGTGCCACTGCACTAGGCTACAACACCGTCCCAATGCAGCACGACTGTcccactccacagtgctgcGGCTGTACTGCACCACTGTCCGAAATAAAGTATACTCCCGGATCCTGGGGCTGCGGCCCACCAACCTCTTCTACTTTGGGTCCCGGTCTCCCCAGGAGCTCCTGAAGGCCTCAGGACTCACACAGAGGTGGGTGTACAGGGAGATTTCCAACTTCGAGTATGAGAGTTTCGAGGACTCCACTGGCACTATCGACAAGTTCCACTACGGCACACACTACTCCAATGCAGCCGGAGTCATGCACTATATGATCAGGACTGAGCCCTTCACCACCTTGCACATACAGCTACAGAGTGGCAGGTTCGACTGTGCGGACAGGCAGTTCCACTCTGTTGCTGCAGCCTGGCAGGCCCGGATGGAGAGCCCTGCAGATATGTCTCAGGACAGCGTGAGTGACGTGCTGCTGCCGCGATGGGCCAAATCTCGGGAGGACTTCATCAGGAAGCACCGCAGAGCTCTGGAGTCGGAGCACGTGTCCACTCACCTGCACGAGTGGATCGACCTGATCTTTGGCTACAAGCAGAGGGGCCCCGAGGCCGTGGAGGCCCTCAACGTCTTCTACTACTGCACCTATGAGGAGACCGCGTCCCGCCGCCAGGCCCGCATGGACACCCTGCCACCCAACCTCTTTGAGCATCTCAACAAGCTGAAGGCGTTTGTGGAGGTGGTGAGCGATGGCGTGCCACTGGTCCAGGCTGTGGTTCCCCGAAACCAGACGCGCTCCTTCATCACACAGGGATCAGACCTGCTGgtgACAGTCAGTGCCAATGGCCTTCTGGGCACACACAGCTGGCTGCCATACGACAAGAACATCGCCAACTACTTCACCTTCACCAAGGACCCTACCATCTCCAACCCCAAGACCCAGCGGATGGTGTGTGGCCCCCTGTCCCCAGGGGCGGAGCTGGGCCCACGGGTGCTGGTGGTGTCCAGTGACGGGAGGCTGCTGTTCAGCGGGGGGCATTGGGACTGCAGCCTGCGGGTCACTGCGCTCAACAAGGGCAAACTGGTCGGACGCATCTGCCGACACATCGACGTGGTGACCTGCCTGGCCTTGGACCTGTGTGGAATCTATCTCATCTCTGGCTCCCGGGACACGTCCTGCATCGTCTGGCAGGTTGTGCAGCAGgggggATTCTCCAGCGGCCTGAATCCCCGGCCAGTGCAGGTTCTCTGTGGCCATGACCAGGAGGTCACCTGTGTGGGAATCAGCACTGAGCTGGACATGGCTGTCTCAGGGTCAAAGGACGGCACAGTGATAGTGCACAGTATCCGACGCGGGCAGTTTCTGCGCAGCCTGCGTCCGCCGTGCGAGGGCTGTCTGGGGGGCAGCGTGACGGAGCTGGCAgtgCGATCAGGGGCCCTAACTCGCCGGCTGTGGGGCTCCACCCGCAGGATCTCTCAGGTGTCCTCAGGCGAGACAGAGTACAACCCCCCTGACACTGCTAGGAAATAGAGGCCGGGCTGCACCTGCCATTGGTTGGGAAGGTGGGGGACAGGGCACGGGGCTGGGAATACAGACAGGCCTCTGGAGTAGAGGAAAAGAACACGAACCTTGAAAGGACATGGACAAGGATTGTAGGACCCATTCTTCTCCACTCccctcctgtcctctctctctcccgacCTTCCTCTCTTCCACTGTGACTTTACAGGGCCCCTCTCTGTTCCCAACCAAACTCCATCCGTCTCTCTCCAGTGCTTCTCCAGGGGGCAGGGAGACCCAGAGAGAAGGGAGTCTGATGGATTTTCCTACAGTTGCACTCTTTTCCAAGGAAaaggacaaaaagaaaaaacatgttttgttttatttatttcttttattttcaaccAAAGATACTGGTTCCATTTTAAAGATCACTGTGTATTATACCTCCAGGGTACTGCTGACTTTGCAGCTCGGTGtagctgtgtgtatgtgtgtgtatgtgtgtgtgattgtgtgtgtgctggttcGGGGTTGGGTTGGACATGTACAGGAGGGGCCTCCAGCTATGCCCACGGAGGGACACACAGTTTCTATCCTGCTATGCCCTGCCCTCCTGCCTCCATGCCCCCCAGCCACCCTGTCCAGTCTGCCCCATCTGAGCACCTCAGTTCCCTGCTTCAATATAGAGCTCAAGGGCTGAACAGTGGCTCGCACTTTATATCAATGACAGCAGCTCCACTGGCCTACACCCCTGTAGATCCTCTGTGTTGCCAGCAGGTGCCACCCTGTCTCCATGTTCAGTGCCAGCACTGGGCTCACTCAACCAGCTCTGCCAGACTGCCCACACTTCTCTTGAGGTACAGCCAGTCTGCAGGGTGAGAACAAGGAACCTGGCAGTGGAGCTGAGCCTCAGAGGGTTTCCCCCACCAGAGACAGGCCTTGCAGGGAGCAGctgtgcattgtgtttttgtgtttgtggagtGTCACGGCCACAACTGAAGCAGTTATCCGAGGGACGAGTCCGAGCGACTTCACTGTGAGAGGCAGGGGGTTTGTACTTTCCAGTGTGAACCAAGGTCAGCCCTGAGGCACAATGGGACTCTGTGccgtgtgagtgtctgtgtgttctcCCTGTTTACACCGACCCACCACAGCACGGAGCTCCGGCCGGccgcagtgggggg

Function

GO: NA

KEGG:

id description
K23286 NEBL1_2; neurobeachin-like protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154108 lncRNA upstream 81819 13189282 ~ 13189862 (+) True G122914
TU154105 lncRNA upstream 83403 13187949 ~ 13188278 (+) True G122911
TU154064 lncRNA upstream 204046 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 219291 13052025 ~ 13052390 (+) True G122868
TU154050 lncRNA upstream 238690 13031776 ~ 13032991 (+) True AMCG00002390
TU154127 lncRNA downstream 141 13304697 ~ 13305599 (+) True G122929
TU154271 lncRNA downstream 241508 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 261858 13566414 ~ 13570811 (+) True G123041
TU154277 lncRNA downstream 267963 13572519 ~ 13590681 (+) True G123043
TU154415 lncRNA downstream 1048841 14353397 ~ 14361536 (+) False AMCG00002437
AMCG00002402 mRNA upstream 34276 13228527 ~ 13237405 (+) True AMCG00002402
AMCG00002401 mRNA upstream 77605 13191029 ~ 13194076 (+) True AMCG00002401
AMCG00002400 mRNA upstream 130094 13140667 ~ 13141587 (+) True AMCG00002400
AMCG00002393 mRNA upstream 142032 13125378 ~ 13129649 (+) False AMCG00002393
AMCG00002394 mRNA upstream 181298 13089416 ~ 13090383 (+) True AMCG00002394
AMCG00002409 mRNA downstream 3441 13307997 ~ 13328399 (+) True AMCG00002409
AMCG00002406 mRNA downstream 64755 13369311 ~ 13373738 (+) True AMCG00002406
AMCG00002407 mRNA downstream 71024 13375580 ~ 13376288 (+) True AMCG00002407
AMCG00002412 mRNA downstream 84629 13389185 ~ 13406063 (+) True AMCG00002412
AMCG00002414 mRNA downstream 126280 13430836 ~ 13439194 (+) True AMCG00002414
TU154081 other upstream 141984 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 209996 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1131216 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1435512 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1577516 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3653605 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4610880 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5527458 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5825847 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 6969533 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_06814184_06871990.mRNA True 8257 mRNA 0.53 53 CI01000016 6814024 ~ 6871990 (-)