RNA id: AMCG00002413


Basic Information

Item Value
RNA id AMCG00002413
length 3117
RNA type mRNA
GC content 0.62
exon number 16
gene id AMCG00002413
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13440937 ~ 13455498 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTCGGAGGAAAACAAGAAGAACCGGAGTTATCTTTCTGTCAGCAACAAGAACTGGACAGCATCGGCTGACATGACAAAGAAGAGGAAAAGGCAGGATGACTTCCAGAAGGTCAAGCTGAAGGTGGGGAAGAAGAAGCCGAAGCCGAACAATGCGACGGATGTCAACTTCAAGACGAGAGGCATCAGGCTCCCGGAGCAGCTGAAGAGCGACAAATCTGGGCCCACCACCCGCCGCCAGCTCAGCATCAAGGACCTTCTGTCCCAGCTGCACCACTACAGTAGCGGGGTGAAGCAGGAGGCCCTGGCCGGGCTGCGGGAGCTGCTGACCCAAAGCCCTGGGCTTCTGGACGCCCACCTGTCTAGTGTGCTGAGCGAAGTGGCTGCCGTCTTCACCGACAAAGAACCGGCGGTGCGGGCAGCCTCTGTGCGCCTGCTGGGCTTTGTGGCACAATGTGTGCCGGCGGAGCGCTTGGCGCCCTTCTTCCCTCTGCTCAGCGCCCACCTGTCCTGCGCCATGACACACATCGCCGAGGGCATCCAGCAGGACGCGCTGAAGATCCTGGATGTGCTGCTGGAGCACTACCCCTCCCTGCTGGCCCAGCGCTGCTCCGTGCTGCTCAAGAACTTCCTGGAGCTCATCTCCCAGCGCCGGCTGTGGCGGCCGGGTCAGCCCGGGAGCAGTGCTGCGGGTGGTGCCTGGGCGCTGGCTGTCAACCCTGGCAGGAAAGTCACGTCGCAGCAGTGGAGGCTCAGCGTGCTCAGCAGGCTGGGCCAGTTTCTGCAGGCTGTGGTGGAGGAGCGATCAGTGGAGGAGCAGGCTGGGCCGCTGGACGTCCTGGACACGGGTGCAAGGGAAGGCGGTGGCAGCGGAGGGAAGATGATCACCCCGCTGGAGCTCACGTGGGAGGAGCACAGCTTCGGCAGGGGAGGTGTGCAGGTGTATGAGAACTCCGGGGCCCACCCGACGATGAGGTCTGCGTTCCAACTCCGGCCAGATACAGAGCCTGGGGCTGGTGTGGAGGAGGGCCTGGATTCAGCAGAGATGGTGCAGGGCTTTGCATCCACGCTAGTCCCCCTGCTTCTGGAGGTGTGGGTGGAGGCATGCACGAGCGGGCAGGGCACCTCCGACAGCGGGCACCTGCTGCACCCCGAGGCCATGGCGCTCATGTACCAGGTCCTGAGCATCCTGCAGCTGCTGCGCCGGCTCAGTCCACACCGCCACCACCAAGACGAGCTGgACACCTGGTTTCGCAGCACTTACCTTGGTGACTTCAAACACCACTTCATGAAGAACTTCCCCTATAGCCAGCTGGAAGTGGCCAAGCACAAGAAGAAAGGGGACAGCAAGAGGAGTAAGCCGCCTGCAGCTGGGGGACCCAGTGTGGAGCCGCTGGCACTGAACCTGACCCTGTGCCAGGTGATGGTGACTCTGACCTCGGGGGCAGAGGGCCGTCAGGACGCAGAGTGGCTGGCCCCCATCAGGGCCTTTGTCAGGGACAGCCTGTCCAGTGGCACCAGGCTCAGCGCCAAGCAGCTCGGGGGTCTGCTGGAGGTGGTGTGGCGGCTTGTGATGACCCAGAAGAGCCGAGCGGTGAcggaggagctgctgcaggcgGTCAGTGTGCAGTACCAGCAGAGGAACCTGTCCCTGCCCGTGCGCGTGCTGCTCCTGCGCTTCTTCAGCCGCCTCTACCTGCAGGAGCACGAGGCCAACGCTCAGGTCACCAGGAGTAAGGTGCTGTCCCGCTGGCTGGCCGCTCTGCCCCTGCAGCTGGCTCAGCTGGGCTCCAAGAACCCCCAGCTTTCGGCCCGGCTGCTGCTCACAGTGCAGGCCGCCGCCGCCCGCCGTAACCGCGAGCTGCTGCTCAGCCTGCAGACACACGCCTGCCAACTGTACGACCCAGAGAAGGGCAGTGTGGTGCTGCTGCCCGCAGACTCCCAGCAGCGCTTGGTCCAGCTGGTGTACTTCCTGCCCAGCCTGCCTGCCGAGCTGCTGTCCTGCCTGAGCCGCTGCTGCACGGCGGGGAGAGTGTCCGCCAGCCTGGCCGCTTCGCTCATCCGCATCCTTCACATCAGgTCCCCCCTCAGCGGCTGGGCAGCCGGGGCTCCGGACTCGGCGCTCTCTGATGTGGATTACTTCAGCTTTCTCTTCTCCACTCTCACAGGTTTCCCCAGGGAGGAGCTGGCGGCTCTGCAGACAGGCAGTGAGGAGGAGCTGTGTGGGCCCTCGGCTCTGTGCCCCCTGAGCCTGTACCCCACCGAGCTGGACCACTTCATACATCATTGGGATGTTGTGGAGgaGGTGTGTCACTGCCTGGAGACCGTGGGGTCCAAGAGCCAGTGCTTTGACATCCTGCAGAACGCCATCTGTAAGAACCTGgcagggCTGCAGGTTCTCCCCGACAGCACTGCGGCCGCGGTGCTGCGCTGCGTGTCCCGGCTGCTGGACCTGTCCGTCCTGCCCAGCGAGGGGCTGCTGCGCTTCCTGTCCTCCTGCTGCCTCAGCCTCCTGACGCTGCTGCTTGTCCCCCGGCTGCTGCGGCTGGTGCTGCAGGGCCTGCGCGTACTGGAGCTCAGTGAAGAGGAGCTGCCCCTGGCCGCCCAGTTGCTCGCCCTGCTGCTGCAGCACAGCCAGCTGCGCAACCACATGCTGGCCAACAGTACCCTGCTGCAGCACATCATACAGGACCTCACGAGGCGCTGTCGGGGCGAGGCGCGGGAGCAGTGGCTGACCGACCTGCTGTACTGCTATAGCGTCACCATGTCCACGCAGCACCGAGGGGCAGTCGGCCTCCAGGACATGTACTGACCCCCCATCCCTACCTGACCCCCCACTAACGCAACGCACAGTTTACACTTGTATAAAAGACTGCGTCAGACACTCGGACTGCTCTGAAGACACACACTTCTTAGTGGATGGTAATTCATTTTCCTCTGTGCtttattccatttgttttcagttttttcatttATGATGGTGATGCATAGAAACTTTTCTTGTTTGGCAGGGATTGTACTGTATGAGTTAAGAATCCTGTCCTGtgatatttttcttattgaatTCCAAAATGTAAAGTGCTGATCAATTAAAGAACAGAGACTCTGATGTTCACAA

Function

GO:

id name namespace
GO:0071339 MLL1 complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154127 lncRNA upstream 135338 13304697 ~ 13305599 (+) True G122929
TU154108 lncRNA upstream 251075 13189282 ~ 13189862 (+) True G122914
TU154105 lncRNA upstream 252659 13187949 ~ 13188278 (+) True G122911
TU154064 lncRNA upstream 373302 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 388547 13052025 ~ 13052390 (+) True G122868
TU154271 lncRNA downstream 90566 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 110916 13566414 ~ 13570811 (+) True G123041
TU154277 lncRNA downstream 117021 13572519 ~ 13590681 (+) True G123043
TU154415 lncRNA downstream 897899 14353397 ~ 14361536 (+) False AMCG00002437
TU154427 lncRNA downstream 909538 14365036 ~ 14366335 (+) True G123169
AMCG00002414 mRNA upstream 1743 13430836 ~ 13439194 (+) True AMCG00002414
AMCG00002412 mRNA upstream 34874 13389185 ~ 13406063 (+) True AMCG00002412
AMCG00002407 mRNA upstream 64649 13375580 ~ 13376288 (+) True AMCG00002407
AMCG00002406 mRNA upstream 67199 13369311 ~ 13373738 (+) True AMCG00002406
AMCG00002409 mRNA upstream 112538 13307997 ~ 13328399 (+) True AMCG00002409
AMCG00002418 mRNA downstream 34680 13490178 ~ 13511283 (+) True AMCG00002418
AMCG00002422 mRNA downstream 199741 13655239 ~ 13656558 (+) True AMCG00002422
AMCG00002423 mRNA downstream 235522 13691020 ~ 13696602 (+) True AMCG00002423
AMCG00002424 mRNA downstream 244752 13700250 ~ 13718461 (+) True AMCG00002424
AMCG00002429 mRNA downstream 411616 13867114 ~ 13877797 (+) True AMCG00002429
TU154081 other upstream 311240 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 379252 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1300472 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1604768 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1746772 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3502663 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4459938 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5376516 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5674905 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 6818591 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile