RNA id: AMCG00002414


Basic Information

Item Value
RNA id AMCG00002414
length 3530
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00002414
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13430836 ~ 13439194 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacacattaacaTGCTTGAGAAAAACCCTATTAGAATGACTCAAATGTGGTTTTTGGTTAGATCGTACGGAGTGACGTCATTAGCAGTGGACGGAAGTTGAGTCTACGCCCCTCCAGACCCGACAGAGGTGTATTCGCCATCTTCTTCAGATCCACTCTTCTGTGACTctttgcagtgtttttacaATTTTAGgatggatgttgatatggatgatgctgctgctgccgccgccgccgccgacGCAGCTGCtgcaaccaccaccaccaccaccaccaccaccaccgctGCCACCGTCGTCGCTGCCATCGCTGCTGTTGATGATACTgcagctgctgttgttgctgctgctgtgcagGCAAATACCAAGAATGATAAATTGTCCTGTAGGATATGCCATGTCAGTTATAAGACGTCTCAGGCTTTACAAGAACACTTCAAGGGTCCGAAGCATTAcaaggtcagtgtgtgtgagagaacaGGGAAGCTGCttcagagagcacagagcattatttccctgtttattttatgaatttaatttttgtttcccCAGATACATTCCTACGCTTGACTTAAAGCGTAACACCTAGAGTGTTACACGCTAAATCAGCACAAACCCTAAGAGGTCTAGAGTGAAATAAACTGCTGGCTTCCTTCACCCGATAGACCCAATCAGCAGAGCTTTACTCAAGCCCCTGAGACCAGGAGAGTCTCCATCAGACCTGGGCTGTTCTGGCCCGACTCCCTCTCTCGGTCGTGGTGGTTTTTGCTCTGCCCACTGTGGAGAGCTGTGGGCAATATGATGTTCTCCTGTGGCTCCTCAGCCACAGGGGAACAATGTGGGAGAGAGTGGGAGTTGGGGTAGTGGTGGGTGGGAAATGTTGATGCACCTAATGCAGTTACGCAGGTGTCTGCCTttacaggacagtacaggtgccTTTGCAGGAGTCTTACCTGCTGCACAGAGGCCAGCTGGATATACTGATCTGAACCCCctagccagccagccagccagcatcTTGATGTTTATGTCATATGCTCATTTAATTTGCTAGTTGGCtcatgcctttatccaaggcgtATTTGTTTAAGTATTACAGGGGTTACTAGTCTGATATTGCAGTCCAGGTTGTTCTTCTGTAGTAGGAATGATCAGCCAACCCCAATACTGATACCTGGGGCACGCCACAGGGCACCTCACATCAGGATGAGGCTGCTTCTGCCTTTAAGTAATGCCTTGTTTTCTGTGCATTAACTGACTCTTTACCCACGTATATGAAGGTTCAGATTTAAAGCTTTGGATGTCTGACAGAACGTAATGTATTGTGGTTCAGATCCAGCACTAGTGGGTGTTGCTGCTTGCCTCTGGCACTCCCGGTGTTGCTAACAGTGCTGAGCCACGCTGGCAGGCTGTGGCAAGTTCCTGGTGAAGCAGGAAGCCACAGCTGGAGTTGAGATCAGAAATATGGATCTACAGGTATAACCCTGCTCCCTTAAACAACCGTGGAGACACCTTGCCTCCTCAATTCCACAGTTTCACTGGTCAGTCCTTATCTGTGCATATTGTCTTCCCAGGCACATACTGGTGACCTCATGCAGCATGTGTCTTGAATCCCTCTTCAGGACGTAATCTTTGCTGTGTTTTGAGTAGAGATCATCTTACTTACCCCCCTCACTGCAGAAGGAGGGTTGAAGGCCAATGCTGAATGCACCACTATGAGGCGTGCCTTCAGATGTTCGTGGAATCCCTCATGGTCGCCTCTCCAAGAGGAGACCCTGCAAGTCTCGCACTGTCTAACACAGATgttttgtctctttctcttccccGATGGTTTATAACACGTCCTTTGacagaaaaaacagcagctcAGAGAACCAGGATCCCGTGCTGCTCTCCACCAGCGCCTCTCGGCCTGAACTgacctgtctgtctctgctgcCTCTAGTATTTTCAGGTCCTGGGATTCACATGAAGTCCTTGGAGAAGGTGCTCAAAAGCTGCACTGAACCCATTGTCGGTCTGCAGTACGTGTGGGAGTTCCGCAGCCCCAGCCGGAGTGTCCCTCCACATTACCAGTGCAAGCTGTGCAAAGTGCAGCTGTTGCAGAATGAGATGGTCATGCACATCAAGGGCTGGAAACACTGCTACAGGTTGCTGAAAAAGATCTACCCTAAGCTGCTGACCGTGAAGGAGGAGGACGCCGTGAAGGACCCGGCCGTTCGCAAGGTGGTCAAAGACATTGCCGGCCAGGTGGAGAAGGCCTCAGGAAGGGGCAACATCCGGGTTTTGATGAAGGAACCTATTGATGTCCCATCTTTCCAGGGCATGGTTGTCGCAATGAAGCCCAAAATGTCCAGACAGGGTGCCCAGAACCAAGGGGGGAGATACCAGGGGGGCTACCCGAACCACATGTACCCCGCTGACCCGGGATTCCCAGAGTTTCCCATGGGGATGAGGAACGACGATATGTccatgaggatgaggatgaggaacGATGACCTGCCCATGCACATGCGCCCCGAGGACCTGTCCATGAGCCGCTACCCCGAAGACATGGCCAGGGGAATGTACGAGGACCTGGCCCCCCAACGGCCACTCAGCCCCGGCCACGGCCGCCGCTACCCTGACGCATACCCGGGCGGCCGGCGCTCCAatgagagggaggagaggggcaGGAGGGAGATGGTGGACTTCGATGGCAGGCCCTCCAACCCCAtgaggagGGACTATGACAGCTACAGGGTCAGAGGGCCAGAGGGCGGAGCCATGGACCTCTCTCAGAAAGATGGCCTGCTGCCCAGACCCCTGGAGAAGAGTGTCCCGGCCACACTGTTCGAGTGCCTGGGGTGTTTCTCAAGCCGTGGCTGTTGGTCTTGTTTCGCCCTGCAGGAGAACTTCCGCATTGAGAGCGAGTCGGACGCGCAGATCGTGCTGAAGGTGACGCAGAAGCTGACGGATGTGCTGATGGAGTACCGGCTCAGGACCATGTCCGGGATGAGTAACAGCAAGCTGACCTCCAGCCCTGACAAGTTCTCATCCTCCAGGTTGTCTGGGGGAGATAGATACCCAGGTAACGCCAGCACATACCTCAGCACAACACGAAACTGGGCCGGGGGTAGCGGTGTCTGTGTGGAGGGGGGAGAGATTCATCCAGATACTATGACTGAATGGCCTGCTGGTGCCCCACTCATGCCCAAGACTCGCTGGGACCAGAGGAACTACACCTGCACTGACACCGAGGGATGGGAGAGTGGAAGATGGAAGTTAATATCAAAGCAGTGGGCCCATCCTGCTTGAGTGTTGATTGGCTTGTTTAATCgtaatcatcattattttaaacttgtttaaatCTAAGTGAGAAGTGAGTTTCAGATGCTTACATACAGTGTGTGAAATTatcaatttctgttttattgtttttttaaaggtatctttttattttggtgaatTTTAGACCTTTGGAATCTGTTGATGTGTGCAAGAAGTTTGTAAGAATGTAGAACCCTGTCTAGAACGCTGCATGCTGGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154127 lncRNA upstream 125237 13304697 ~ 13305599 (+) True G122929
TU154108 lncRNA upstream 240974 13189282 ~ 13189862 (+) True G122914
TU154105 lncRNA upstream 242558 13187949 ~ 13188278 (+) True G122911
TU154064 lncRNA upstream 363201 13067265 ~ 13067635 (+) True G122876
TU154055 lncRNA upstream 378446 13052025 ~ 13052390 (+) True G122868
TU154271 lncRNA downstream 106870 13546064 ~ 13546300 (+) True G123039
TU154275 lncRNA downstream 127220 13566414 ~ 13570811 (+) True G123041
TU154277 lncRNA downstream 133325 13572519 ~ 13590681 (+) True G123043
TU154415 lncRNA downstream 914203 14353397 ~ 14361536 (+) False AMCG00002437
TU154427 lncRNA downstream 925842 14365036 ~ 14366335 (+) True G123169
AMCG00002412 mRNA upstream 24773 13389185 ~ 13406063 (+) True AMCG00002412
AMCG00002407 mRNA upstream 54548 13375580 ~ 13376288 (+) True AMCG00002407
AMCG00002406 mRNA upstream 57098 13369311 ~ 13373738 (+) True AMCG00002406
AMCG00002409 mRNA upstream 102437 13307997 ~ 13328399 (+) True AMCG00002409
AMCG00002408 mRNA upstream 126280 13271681 ~ 13304556 (+) True AMCG00002408
AMCG00002413 mRNA downstream 1743 13440937 ~ 13455498 (+) True AMCG00002413
AMCG00002418 mRNA downstream 50984 13490178 ~ 13511283 (+) True AMCG00002418
AMCG00002422 mRNA downstream 216045 13655239 ~ 13656558 (+) True AMCG00002422
AMCG00002423 mRNA downstream 251826 13691020 ~ 13696602 (+) True AMCG00002423
AMCG00002424 mRNA downstream 261056 13700250 ~ 13718461 (+) True AMCG00002424
TU154081 other upstream 301139 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 369151 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1290371 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1594667 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1736671 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3518967 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4476242 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5392820 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5691209 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 6834895 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile