RNA id: AMCG00002415


Basic Information

Item Value
RNA id AMCG00002415
length 1049
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00002415
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13406352 ~ 13411130 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgacctctgacctcgaCACTGTCCGGTCGACGGCACAACACGGTTTTCCAGACGCGACATGGATGATATACTGAGGATAATGAAGGGATGTCAACCCGTGGAAAAAGTGGAACCCAAGATGGAAGACCTGATGGGTAAATTACGGAGAATGCAGAAAGCTAAAAGAGCCCTGGAAGAGGAGCTGAAAGATGCAGAGTGCCTCAGAAAGACCCTACAGGAGGAGCTGGATTCCTtgCACAAGGAGTGTACTCAAATGGATGAGagatacaaagaaaaagaagAGGCTTGCAAGGTTCAGCAGTTCAAATGTGAGGAACTAGAAGTTGACGCAAACAGGCAGTTGGAGATTCACAGTAAGAATAAGCAGCTGCTAGCAGAGTATACCTTTCAAATTCAGGAGACCAAATTAAAGCACCGAAAACAAAGGGTAAAGTTTGAAAACCAGCTTCAGCAACTGATGGAGCAACACAAGAATATGTTCTCTATATATtcTCCAGAAGGACTTCCCAGGGAAATTGAgaatattgaaaatatgaagTCCCAGCTATTAAAAGCTGAGCAAATGAAGCTGAAGCAGCTGAGCAGCCTTGCAGAGGAGATAAGACTAGCAGGATGTTCTGCAAAGGTGACCAATGACCCTGAAGAAAACTAATTTCAGACAAAAACTGCAGATGAACAGTAAGATTTAGTCTTTATATAAATCCAGGCAGCTTTCTTTTGCTATTTTTGGAAAGCATTGAGGTCTCCCAGTTGTTTTGACTGTTATCCAGTGAAGGATTTTGGTGTTTAAGACTTCCCACATACACACTGCCCTCTTTCTCCTAAATACTGTTCTACAATACAGTCTGTGTtttgggaaaatacattttggttttgaaTTGTTTGGGTTTATATATGGGTGTATGTCCTTTAAGACCTTTTTCATGACAGTATGAATGTTTTGTGCGGGAAAGGGTTTAtcttatttaattgcttttgtccCCCATTGATTTTGTCTCGGTCTCTGTGGTTGGCTAGCAGCACCTTCAGCGCACATCCCTCTGTGAAC

Function

GO: NA

KEGG:

id description
K19534 SYCE1; synaptonemal complex central element protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154158 lncRNA downstream 100757 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 103270 13302120 ~ 13303082 (-) True G122956
TU154156 lncRNA downstream 106234 13299523 ~ 13300118 (-) True G122955
TU154155 lncRNA downstream 107678 13297432 ~ 13298674 (-) True G122954
TU154154 lncRNA downstream 108998 13296904 ~ 13297354 (-) True G122953
TU154199 lncRNA upstream 369 13411499 ~ 13412296 (-) True G122991
TU154235 lncRNA upstream 43955 13455085 ~ 13457059 (-) True G123014
TU154255 lncRNA upstream 75984 13487114 ~ 13491617 (-) True G123027
TU154403 lncRNA upstream 667114 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 1131691 14542821 ~ 14543020 (-) True G123175
AMCG00002411 mRNA downstream 22297 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002410 mRNA downstream 36955 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002405 mRNA downstream 156501 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 179208 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002403 mRNA downstream 192549 13196825 ~ 13213803 (-) True AMCG00002403
AMCG00002416 mRNA upstream 3170 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 47353 13458483 ~ 13478876 (-) True AMCG00002417
AMCG00002419 mRNA upstream 103194 13514324 ~ 13531753 (-) True AMCG00002419
AMCG00002420 mRNA upstream 126352 13537482 ~ 13570758 (-) True AMCG00002420
AMCG00002421 mRNA upstream 238097 13649227 ~ 13654247 (-) True AMCG00002421
TU154046 other downstream 376946 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 376946 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1400001 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1533490 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1551461 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 238098 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1530130 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3425026 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4511322 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9674864 23085994 ~ 23153164 (-) True G124719

Expression Profile