RNA id: AMCG00002416


Basic Information

Item Value
RNA id AMCG00002416
length 3920
RNA type mRNA
GC content 0.54
exon number 23
gene id AMCG00002416
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13414300 ~ 13430384 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATACACAGGCGTGGGAGCCAGACAGACATGTTAAAATGTCAGAACtgggttgtttatttataaccGTATATATTTAAAACGGTAGCTTGCTTATCCAACGTGTTCCGATGATAGACCTATGAATAAACGCGCTTTAAATGAAACCTGGTGGTTGCCATATTGTCTACAGACGGCTCTGTTTGTAAAGCGGATTGATCAGCTTTCACAGGATGCTTTGAAATCTGAAACgtatgacaaaataaaaacaacaaccaaaaatgaCAGCCCGAGAAGAGAAACAGCagctgaaaaaggaaaaggatcAGGGGAAAGTGAAGGAGATCAGTGGTGCTGAGAGCGGATGGACTGGCCAGGTGTTTTGCCAGAAAGTGCTAGCGATCAGGAGTGCAGAAGCTGCTGACCCCAAGGCAAACACAGAAAgtatgaacaaaaaacagataatcCTGCACCTCACGAGCTGGCAGCACCGCTTCGCCTACCTGAACTTTGAACACATGGAGTCGGTGCTGCAGCACAGAGCCTCCACAGTGGAGATGAGGGAGGGGCCCGGCCAGTGTGAGATTATCATCCTACCAGATACCTATAACTATGAAGAAGTTCAGGTTGTCAGGCCTTGCTCCAATACAGGAAATGACAGTAACGGTACAGCAGCGAGACCGATGACCCTGCAGCAGTACATTGGAGACCCCCAGCGGACTCAGCCCTTGCTTGGTCTGAGGTTTCTGACAGAGTTCAGACAGAGTGACGGGAGCGAGCCCCATGTCTACCTTTGTGAGGTCTGCAAGAAGAAGGTGTCTGATGAGTTCATCCTCTCGCACATGACCGGCTTCAAGCATGTGGTCAGCTGCCTGgagCACCTGGGTCACAATCCTCTGGACAAAGATAACCTCCCTAAAGATGTGATTGATCGGTCCAAGGTGCTGACGGAGATGGCCAAGCAGGTGAAGGAAACAGAGGCCCCAGAGGACGTGCAGATTATGAAATTGAATCCACTGGCCATGAAACAAATCAGAGGGATGTCGGTTCACTTTGCTCTGAAAATGATGCAGAAGATCAAGAAGGCGAGTGGGGAGCAGGGCGCTGGCCAGCCTGAAGATGGGGAGATCCAGAAGATGATTGAGGAGCTGATGGCTGACCAGACCGGAGCTGTTGAGGAAGGACCAACTTTAGCGTGCTCTGTGGTGCTGGTGGACTATCTGAAGAGTCCGTTCAGGACGGAGCCTGTGATTGGTCTGAGTTCTATTATAGAGTGCCGCAGTTCCATAGGATGGCCCCCACCCTACTATTACCTGTGTGAGCTGTGCACCGCCAAGATGAGGGAGGATTACATCATCAGTCACATCATCAGCTCCCTCCATCGCTTCTTCTACATTAAAGCCTGCAATCCCAGCCTCCTTGACAGCAGTGAGAAGGATCCCCAGCTGAGCACCATGGGCCCCTTTCTGCACAAGACAGCCAGCGACCTCCAGGAGCAGGAGGGCCATGGCGAGGTGCAGgTGGTGACACTGTCTCATGCGATTTACAATAAAATTGTGTTGCAAAGCTATCAGTCAGGATTGAAGAAACCAACTCGGAGAGAGCGCCATCGGACCCGCAAGCCTGAGACAGGACTGGACCACAGGACTCTGAAGGGCGGGTCGCACACTGACGAACCTGCCAAGTACTCCGACCACAAGCATGCCAGACGCCGACCTCGGACTGGGCACCGGAGCAGGTCTCGAGAGCCTGCAGAGCGATGGTCTGGAGAGCCGTGGAGATCCACACATGACCACAGAGAGTTGGCAGGGTACGAGGAGATAACTGGAGACCGTGGGCATCCACAACCCGCTGAGCACTTCACCCCAAGACACGGCCTCCCTCAGTATTTAGCCAGCAGGAACCCTGAGGACATCGGAACATCAGAAGGGGGTCTCCCTCACATGCACCCTGACAGTCAGTCTGCTCTGATGCATCAGCATGGCTACCAGGGCCACCAGCAGCTGGATGCACAGCCCATCCTGATGCGCCCTCTCAGCCCCCACCGCCAGCCATTCCCAAAGAGGAGGCCGTCTCCAATGTGTGCCCTTGATCGGGAGTTTTTCCCAGAGCGGCATGCTGGTCCCCATGGGCAGGCGTTCCCTTCAGGTGTCCAGGAGAATGTGTTCCCAGATGTAACACCAGTTCCTACACCAGGTGAGGGCCGGACTGTCCTGCTACACCCTGTGGGTCCCCAGGGACACACACTGCCAAGGAGATTGCCAGCTCATCTGCCCCCTGAGGGCCTGATGGTAACGGTGCGGCCCTCCATTGTGCAGGATGAGAGGTTTCCAGAGAGAATGCCAGAATCTGCTGTGCGGTATGAATCTCGGAGATCTGTAATGCTCCCTGGAAGCTCTCTGAGTCGGACATTCCCAGAGAGGACAGGTCAAGACCGCACAGCGTACCCCAATAGAACTGAGAGCAAGAGGTTTGCCAGAGAGGTGGACGAAGGTGGCAAAGGGAAGCACAGCTTTaaggaggagaagaaacagAAGCTGCTGGAACTCCTCATGGGTCTGCTGGATTCCGAAGGGACAGAAGGTGTCACACATCACAAACCAGACCAACACCAGATGATGCCGGGAAGCACAGCACCCTTGGGTTTGACCGAACACCTTCCTGACAGGCACTCTGGCACAGCCCCTCCCAGGAGGATCCACCCCACTAAAGAGCAGATGGTCATCGAATATGAATACTCACGTGGTCGTGATGATGAAAGCCCATTGTCTGCACCAGACCTCGACCAACACAGATCCTCCTGGGCAGGTGGTGGCAGTGGCCGGGGGCACAGTTGGGGCATGGAGTTTGACACAAGCTTCCCTGCTGTTCCAGGGAATACAGATCACAGAAAACACCACAGTGCCATGAAGCAGGAGGAATCCTGGGCCACTTCCCAACGAGGGGAAGGTTTCTCACATGACCGGTATACTGAGGAACTTGAATCTGCATGCTATGATGCAGGCAGGTATGCAGGGCCACAGGGTGGCAGCGAGTTCCCTGCACCGGCTGGATACAATAGAGTCCCTGCCAAAGTCGGGGGCCAGAATGTGAGCGAGTTCCTCAGAGGGATACGATATTCTGAAGACCGCACCAGGAGGACCAGCCCCTCAGGGTCCCATGCTACCAGGCTGGCCACAGCTCCTGGAGAGGGGTACTGGGGGGAGGCAGCAGCAGGACGAGGGTATAGAGATAGGGTACAGGGGGTCAGGGACAACAAGACAGGTGGCCTGGTTGGAGATAGGTGGTCAACCAACTACTCGGTTGGAGGAATACCTTTTGGTCCGGGTGGAAGACTTGCTGCTGCTTCGGCCTATCCCCCCGAGGCTACCCAAGGCAGACAGCTGGACAGGACATCTGTCTTGGGGAAGAGGGGTTGGGAGAAACTTGATGGGTTTCAGCCCTCTCCTTATGGAGGCTATGAAAACTGGGAGTCTCAGAGCCCTCGACCTCCTCCCACCAAAATCCCTGGGTTGGATCAGTCTGACTCTCAGAAGGATCCCACGGAGGAGTTAATGAAATTGTGGAAGAATATCTCCCGGGAGCAGGTGAGGCAACATCCTGAAGAAGCCCTCCCACCTGATCCAGGAGAGACACTGTGGGAAGAGAGGAGAGCGGGGCTGAGGAGGCCCCACGAAGATGCAGAGAAACGGCAGGAAAAAGCAGACTGTTCTGGACATCTGGCTGACCAGCTGAAGCTAACCTCCTCCGCCCGCTCATACCTGCATATTCTTGGCTATATTCTGTTTTTACCATGCAGGAGAGCAAGGAGCAGAGAGGCACAAGGGGAGCCTGAGCTGCAGGAGACTCGGAGTCTGGCAGGAACCCCACACAGCTGCCTCTCCAACCCCAGTGTACACCTGGAGAGATACTGGCTGGCTGCTGAGTGTAATATGGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154199 lncRNA downstream 2004 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 108705 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 111218 13302120 ~ 13303082 (-) True G122956
TU154156 lncRNA downstream 114182 13299523 ~ 13300118 (-) True G122955
TU154155 lncRNA downstream 115626 13297432 ~ 13298674 (-) True G122954
TU154235 lncRNA upstream 24701 13455085 ~ 13457059 (-) True G123014
TU154255 lncRNA upstream 56730 13487114 ~ 13491617 (-) True G123027
TU154403 lncRNA upstream 647860 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 1112437 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 1135863 14566247 ~ 14567067 (-) True G123177
AMCG00002415 mRNA downstream 3170 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002411 mRNA downstream 30245 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002410 mRNA downstream 44903 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002405 mRNA downstream 164449 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 187156 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002417 mRNA upstream 28099 13458483 ~ 13478876 (-) True AMCG00002417
AMCG00002419 mRNA upstream 83940 13514324 ~ 13531753 (-) True AMCG00002419
AMCG00002420 mRNA upstream 107098 13537482 ~ 13570758 (-) True AMCG00002420
AMCG00002421 mRNA upstream 218843 13649227 ~ 13654247 (-) True AMCG00002421
AMCG00002425 mRNA upstream 240965 13671349 ~ 13678716 (-) True AMCG00002425
TU154046 other downstream 384894 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 384894 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1407949 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1541438 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1559409 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 218844 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1510876 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3405772 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4492068 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9655610 23085994 ~ 23153164 (-) True G124719

Expression Profile