RNA id: AMCG00002417


Basic Information

Item Value
RNA id AMCG00002417
length 2961
RNA type mRNA
GC content 0.65
exon number 17
gene id AMCG00002417
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13458483 ~ 13478876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAGCAGGGCTTTTTCCTATAATTTTGCCACAGTCAGTCGCAGGCCCGGCAAAGAGGCTTTAAGGATGGCGAACCTACTCCCCCTGTCCTCTGCGGACGCCACTCCACCCAGCCCACCCCCGCTGGGCTCGCAGGTTCACGCCGCCGCTGTGAATGGGGACAGGAGCACTCTGCAGAGGCTCATCACAGCGGACCCCTCTCTGCGGGATAGGGAGGACCAGTTTGGACGGACTCCCCTGATGTACTGCGTGCTGGCGGATCGGCTGGACTGTGCTGAGGCCCTGCTGAAGGCTGGAGCTCACGTCAACAAGGCCGACCGCAGCCAGAGGACAGCACTTCACTTGGCTGCTCAGAAGGGCAATATGCGGTTCATGAAGCTGCTGCTGGCACGCCGGGCCAACTGGCTACAGAAGGACCTAGAGGAGATGACTCCTCTGCACCTGGCCACCCGGCACCGCAGCCCCAAGTGCCTGGCCCTGCTGCTCAAGTACATGGCCCCCGGGGAGGTGGACACCCAGGACAAGAACAAGCAGACTGCCCTGCACTGGAGTGCCTACTACAACCACCCTGGCCACGTCAAACTGCTCATCAAACACGACTCCAACATCGGCATCCCTGACAGTGAGGGCAAGATCCCGCTGCACTGGGCCGCCCACAACAAGGACCCCAGCGCCACACACACTGTGCGCTGCATCCTGGAGGCTGCTCCGACAGAGTCCCTGCTGAACTGGCAGGACTACGAGGGCCGGACACCACTGCACTTTGCAGTGGCCGACGGGAACGAGGCCGTGGTGGCGGTGCTGACATCCTACGAAGGCTGCAGCGTCACGGCCTACGACAACCTGTTCCGCACACCGCTGCACTGGGCTGCACTGCTGGGTCACGCCCGAATCGTACACCTGCTTCTGGAGAGGAACACATCAGGCACCATCCCCTCAGACAGCCAGGGCAAGGGCAGCACTGATGTCATCAGGACCATGTTGGACCTGAAGTCCGACATCGATATCAATATGACCGACAAGTATGGGGGCACAGAGTGGCAAGACGGGAGTTCAGTTCCGGGCAATACTTGCGCCCTGGCGAGTGGCTTCCCGACGTCAGAGAGCTGTGTTCCGGCGACTGTGTTAAGGGCAATGCCACTGACGTCACTCAGAGCTGCCCTCACCCTGCACGCAGCAGCTCTCTCAGGTCACGTGACCATGGTGCATCTGCTCCTGGAGCACGGCGCCATGGTGGACGCCCTGGACATCCTGATGGAGAGCGGCATCTCCCCCAATGTCCAGGACCTGGCGGGCCGCACACCTCTGCAGTGTGCCGCCTACGGGGGCTACATCAGCTGCATGGCTGTGCTGATGGAGAACAGTGCTGACCCCAACATACAGGACCGTGAGGGCCGGACGGCGCTGCACTGGTCCTGCAACAACGGATACCTGGACGCAGTGAAGCTGCTGCTGGGGTACGGCGCCTTCCCCAACCACATGGAGCACAGCGAGGAGAGGTACACCCCTCTGGACTACGCGCTGCTGGGGGAGCACCAGGAGGTGACACAGTTCATGCTGGAACATGGCGCCCTGTCCATCGCCGCCATCCAAGACATCGCCGCCGCCTCCATCCAGGCCCTGTACAAGGGATACAAGGTGCGGCAGGCCTTCCGCGAGCGCAAGAACCTGCTGATGAGGCATGAGCAGCTGCGCAAGGACGCCGCCAAGAAGCGGGAGGAGGAGCAGCGGCGGCGGGAGGCGGAGCAGCAGGAGGCGTTGGGTGGAGCCAAGATGGGGCTGAAGACGCTGTCCCTCACAAACAGCCCGGCCCCCCACACCAAGCGCTGCCAGACACGGCCCCCCCAAGGCGAGGCACAGGCCCCCCCCCGAGGCAGAGAGCGCAGGAGCAGGTCTGCCAGGAGTGAGCTAGCAGGGCCCGTGCCCAGTGAGGCCCCCCAGTCCGTGCCCTCAGCCAACCCTGAGAAGGACAGTCCTCGTCCCCCCAGCTCCTCTGGGCACATCTCCAGAAAGCCCTCTGCCCCCTCAGGGAGGAGGTCTGTGGGCAGGGAGCAGAGCGAGAAGAAGGAGGAGCCTCTGCCAGGACTGGGGCGCAGCACAGGGCCCCCCCCGAAACTCAGCGAGGAGACCCTGAAGGCAGGAGTGAGGGCTCTGAACAGCGGCCGCCATTCCCCTGCAGGGTCCAGCAGGCCGGGCAGTGCCAAGCCGGGCATGCAGACCACTGTTCGGACACTCAGAGTGCCCACTCCCACAGGCACGCAGCTGCCCCCGCTGGCACCACGCTCCCTCAGGGGCAGGAGCTCGGGGGCAAGACCCCCACCCAGCCCGGCCTCCCCTCCCAGCAGAATCCTCTCTGCCCAGCCCTCCCCAGTCCCCCCGGGACCCTGGCACAGCGGCTGTGTGGAGCTGGTGCCCCTGGAGCTGCGTCTGCAGGTGGTGGAGCGCGAGAGGAACCGCAAGGAGCTGTTCAGGAGGAAGAACCAGGCGGCCAGTGCCATTCAGAGGGCCTGGAGGAGgttcCGTGTGCGTGGCCGGTTGAGGGCGGTGTTGGGCGGAGGCTCCCAGGAGGCGGAGTCAGCAGAGATGGCCTCCCTACTCATCCAGCTGCTGTGGGACAAAGCGCTCCCTCCTGACTCCATCTCCACACTGCAGAAGACCACACCCCCACACAAAGCCCAGCTCACCAGGGGCAGTGGGAGGCGGAGCTCCGTTCTTCAGAGCATCTACGCTCGACCCAGCAGTCCTCTCCCTCGCCCAATGCCTGCCGCTCCGAGTGTTGCTACAATCACAGCTGATAAGCCGCAGGTGTCGGCCGGTGCGGTGGCCTTTAGCAGGCATGAGCAGGTGCTGATGGGAGAGGGCTGGGGGCGGCTGCCAGCTCCAGCACACAGAGGCTGCCTTGTCCTCCACAGCCCTGCGGCCGCCGCACACAGCGCCCCCCTCCCAGGATGGCGCTGA

Function

GO: NA

KEGG:

id description
K19626 INVS; inversin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154235 lncRNA downstream 1424 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 46187 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 152888 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 155401 13302120 ~ 13303082 (-) True G122956
TU154156 lncRNA downstream 158365 13299523 ~ 13300118 (-) True G122955
TU154255 lncRNA upstream 8238 13487114 ~ 13491617 (-) True G123027
TU154403 lncRNA upstream 599368 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 1063945 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 1087371 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 1108338 14587214 ~ 14588758 (-) True G123178
AMCG00002416 mRNA downstream 28099 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002415 mRNA downstream 47353 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002411 mRNA downstream 74428 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002410 mRNA downstream 89086 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002405 mRNA downstream 208632 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002419 mRNA upstream 35448 13514324 ~ 13531753 (-) True AMCG00002419
AMCG00002420 mRNA upstream 58606 13537482 ~ 13570758 (-) True AMCG00002420
AMCG00002421 mRNA upstream 170351 13649227 ~ 13654247 (-) True AMCG00002421
AMCG00002425 mRNA upstream 192473 13671349 ~ 13678716 (-) True AMCG00002425
AMCG00002428 mRNA upstream 199896 13678772 ~ 13691226 (-) True AMCG00002428
TU154046 other downstream 429077 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 429077 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1452132 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1585621 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1603592 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 170352 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1462384 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3357280 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4443576 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9607118 23085994 ~ 23153164 (-) True G124719

Expression Profile