RNA id: AMCG00002419


Basic Information

Item Value
RNA id AMCG00002419
length 2077
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00002419
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13514324 ~ 13531753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGAATTGGCGGTTGCACGGGCAGCGGGCTGGACtcttgtttacaaacagaaagTTACCGGAACAGCTGGGTACAATTAAAACGCATTTCGTGCTACAGCAAGGCCACAACTCTGTGTGAGCTGGATGTGAGCAGGCCGGGGGGAGCGGCACCATGGAGGACGAGGCGGGGAAGCTGCCCCTGCGGCGCCTGGAGCTGCCCATCAACAAGTTCATCAAGGTGGCCATCCCCACCGACCTGGAGCGCCTGCGCAAGCATCAGATCAATATCGAGAAGCAGCTGCGGGCGAACGTGCGGGAGATGGAGAAGCTGTGTGGGCGCGTGCGGAGCGAGGACAGCCGTGCCCTTGACCAGCTGGTCCGGCCCATGAAGGATCAGGCCTCCGCTGCCGCCAGAGACTTCCTGCAACTGCACTCTGACCCCACTCCACGGCCAGGGCCCCCCCCGGACGCCACCCCCGCACCCGCCCTCTGCCGCTCCCTCACCACACTAGaCAGTTTCCCCATCAGTGAGGCCGGGGGGGCTCCTGTCCTGGCTCAGGCCCAGCTGCCCCTGCCAGAGATCCCACAGGACCAGAATGCTGCCGAGTCTTGGGAGACACTGGAGGAGGACTTGATGGCGCTGAACGGCCTGGTGAATGAGTTCTCCGAGCTGGTTCATTCCCAACAGGAGAAGATTGACAGCATTGAAGACCATGTCAACACTGCCGCTGAGAACATTCAAGAGGGATCCCGGAGCCTGGGGAAGGCGGCTAAGTACAAGATGGCTGTGCTGCCAGTGGCAGGGGCATTGATTGGCGGGGTGGTGGGGGGCCCTCTGGGGCTGCTGGCGGGGTTCAAGGTGGCAGGGCTGGCGGCAGCGGTCAGCGGGGGACTGCTGGGGTTTGCTGGGGGAAACCTACTGCAGAGAAAGCGGCGAGCCAAGGTGGACCTACAGCTGCAACAACTGTCCAGCAGCTGCCCAGATCTACAGCAGCCGGACGACAAGAAGAAGGActgagaagaggaggaagaggaggaggaggaggaggaggaggagggggggtccCTACAATGAGGACAACCTCTTAAGAAAGactgagacagacacagagagagaggctacAGACCTGATATGTGACCGTTCCCACGCTGTAAACCAGAGCCCAGCTCATATCTCTCTCCGGTTTAAGGGAGGGCAGGAATCGGTGAGCAGGAAGGCACACCTGCAGTGCCCTCAACCCAACACAAAGCCTGACTTTCCCAGGGAGACGACAGCGTGTGCCTTTCAGTCTACAGAGAGCCAGGCCACCGGGTCTGGAGTGGGTCGGCTGGGCCCTGGGGCACTGTCAGTTTGCAGAGACACTCTCTCGATACAAGTTGGAGAACATTGGAAGTGATGCCAAGAAGGaaaattcacatttataaatattcataaattgcctaaaatatttttctgacCTGTTATGGGTGGACTGCAGGTTTTGTAATCTGGAGAAGGGGACTACTGTACTACACAAGCCTTGTGCAATATACACTACTGTATAATCTGATCAGTGACACCGCGGAGTCTATTTGTTTACGAGGAAAGTATGAAATGTGTGGCTTGAATCTGCTCTTTCTGTATATAGTCCCGTAGTGTAGGTTAAATAGCACACTGAATTTTATCAAGAAGCCTATCATGAAGGGCATGTCAAAGCTAGATTTAAGCCAAATTCTGCCCattctgtttgcatttttattcttttgtttcagCCTTTGGTTAAACTTTAATATGatgaaatgaaatacagtaatacatttcaGATGGTTAGACAACTGTAGGTCTTCAGCAAATTTCCCTGTGTAGGATTTTGGCTGTGGTCTGAAACCAAAATCTGCACCCACCCGTCAATCACGGATCACACTCCCGGCACTGCTGTGAGATCAGGGTTTTCCATTAGGTGCAAGTGAGGAGCCACCATCGAGATCAAGGCCTGAGTTTGTGATTTGTACTTGGCAGGTGGGAGtctaattttagatttatttatgtcttgttaattatgtaattgggccaattaagtaattaacaacTTGTGTGTGCACAAAAATacagggg

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08491 STX17; syntaxin 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154255 lncRNA downstream 22707 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 57265 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 102028 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 208729 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 211242 13302120 ~ 13303082 (-) True G122956
TU154403 lncRNA upstream 546491 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 1011068 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 1034494 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 1055461 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 1057056 14588809 ~ 14594542 (-) True G123179
AMCG00002417 mRNA downstream 35448 13458483 ~ 13478876 (-) True AMCG00002417
AMCG00002416 mRNA downstream 83940 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002415 mRNA downstream 103194 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002411 mRNA downstream 130269 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002410 mRNA downstream 144927 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002420 mRNA upstream 5729 13537482 ~ 13570758 (-) True AMCG00002420
AMCG00002421 mRNA upstream 117474 13649227 ~ 13654247 (-) True AMCG00002421
AMCG00002425 mRNA upstream 139596 13671349 ~ 13678716 (-) True AMCG00002425
AMCG00002428 mRNA upstream 147019 13678772 ~ 13691226 (-) True AMCG00002428
AMCG00002426 mRNA upstream 196857 13728610 ~ 13741394 (-) True AMCG00002426
TU154046 other downstream 484918 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 484918 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1507973 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1641462 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1659433 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 117475 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1409507 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3304403 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4390699 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9554241 23085994 ~ 23153164 (-) True G124719

Expression Profile