RNA id: AMCG00002423


Basic Information

Item Value
RNA id AMCG00002423
length 3437
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00002423
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13691020 ~ 13696602 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACAATCGCATAAACACACAATTATCACTAATTCAACCTCTCTGAAATGGACTCCAGCCTGCAGTGGGATCGTCTCTGGCCCATGGCATGATGCTTCTGTACGGAGACCCGCAGAGGGGTTCGTGTTGTGGCGGATTCAGTGCTTCCTAGTGTTTGTCGGTGGACTCGGGTTTCTCTCGGCTTCAATCCGGGCTCCGGTGTCATGTTGTCCGCGTTGAAGCTGCTGCCGCCGCTGCTCCTCCTGCTCTACCCGCACTGCCGGCGGGGTGTCGTCTCCAGCCCCGCCGAGGACAGCGCAGCGAGGACGGGCCGCGGGGAGCACGGAGACCCGGGCCACGAAGAGACGCACCAGGACTCGTACAGCACCTTCGCGTCCGAGTTCTTCGAGTCGCGGTACCTGACCGATGGGGAAGGTTACCCCTTTCCTACTGCCCCACCAGTAGACCCATTCGCCAAAATCAAAGTGAATGACTGTGGGGTTACCAAGGGATGCTTCAGGTACGGGAAGCCGGGCTGCGACGCAGAAACCTGTGATTATTTTCTCAGCTATCGCCGGATCGGTGCGGATGTTGAGTTTGAGCTGAGTGCCGATACTGATGGCTGGGTAGCTGTGGGCTTCTCGTCAGACAAGAAGATgGGTGGGGATGATGTCATGGGCTGCGTCCACGACGACAATGGCCGGGTTCGGATCCACCACTTCTACAATGTGGGCCAGTGGGCCAAGGAGATTAAGCGCAATCCGGCTCGCGATGAGGAGGGCATCTTCGAGAACAACAGGGTGACATGCCGCTTCAAGAGGCCAGTCTACGTGCCCCGTGAGGAGACGCTGGTAGACCTGCACCTCAGCTGGTACTACCTGTTTGCCTGGGGTCCCGCCATCCAAGGCTCCATCACTCGACATGACATCGACTCGCCCCCCGTGTCCGATCACATGGTCAGCATCAACAACTACGAGGATGTCTTCATGCCCTCGGCCGCCTACCAGACTTTCTCCTCCCCGTTCTGTCTGCTCCTCATCGTTGCGCTCACCTTCTACCTGCTCATGGGGACGCCGTAAAGCGGCCACGGACAGGGGAGAGGGCAAGCAATAAATCCACAAGACTGGGAATTACTGTGTGCCACTGTCAAGGAACGGATCTGAGGTGTGCCAtagtatgtgcgtgtgtgtttgtgatgtatatatacagacaaacacacacacacacacacacacacacacacacacactgtacctgagaagaagaagacaaaGTAGTAGATGAAGCTCTCAGATTATTAAGCAAATGATTGTAGTTTCACCATCGTCTAACCAAAACAGTGACTTGAATAAGCACAATGACTTCATCTGATGCTGGGCCATTCTCTTAGGCAGGTAATAACGTTTACATTGATGTTGAAGTTAGTGTCCTCTGCCTTACTCTGCGGTGATTTGCAGTTCTGTTTCTTTGgtgtttacaattattattattattattattattattattattattataaatccaGAGATGCCAGAGTTGCATGTGCCAAGTATTCCCACCCCCTTTACATGTTCATCTCTTGTTCCACTGGTGTTACTCAAGCAGCCCATCATCACAGCCGAGCAAAAACGCAGGGCAATGAGACCGGGCTCATTTCGCATGCATTGCAAGCCggtaaaaaaatctgtttttcttcaggCATTTTTGTTCCTTGCTTTTCCAATGCCAACGAATTTGCATTCACCCTGTATGCAAAGCAGTAAGTGCCAGCTTTGCCTTGGCCATCTGAAGACCGCATGCTGCTGCCTATCTCTAATTAACCTGTAATGTCAGCATCCGTATACACGACTGCTGCCTTTTATGACACCCTGAGAAATCCACTCCAACACCAATTGTTTCCACTGAGTAGTACAGTCCTTGTGAGAttgaaaagatttaaaaatccAAAGTTTTTCTAAggcatttttacaatttttttgtaAGCTAAAGACCATAATCTGAAAGgaacaaaatgataataataaaaatacaatatttgtatagttttagTGAAATACTTAAAATCTGTTTCATTTACCAGTATTTTTAAACGTATCCTGTAAAGGTCAGTCAaattaaagtttgtttgcagtgTGCTTGGAAGACAATTCACTTTTTTACTCAATATCAGGAAATTGGGATGAAAACCCTTTTTTTCTTCGTGGTCTTGATCCAGGCTTTAATCAGTAGACGTCTCGAATAcattgcatatttatatattaaacaggGCGTGTCGATTCGACATTCTATACTTTGTTCATGGAATTAGCCTGATCAGAGATGTGTTATCAGACCAATGGATTACAGGCAGATAATACTGTAAACTTATTAGATAAACAACACACCAGTCCTGGGAAAAATGTTGTGGTTGCGgttaatgttaaaattattGTAAACTCAACCATGTTTAATGTATTCCTGTTTGTACTGGCAAAATATGCAACCTTTTCATTGTGCATTTCACCTGTGTTACTCTTGAGGTATAACCTTTGAATAGCCATATGTGAGGCAGAGTGCGAGTGATGTCCTTATATGAAGTGCCCAGCTACATAGAAGGAGACATAGCGAGTCATTActgatgttttaaaagcaggtaTTAGTGCTGATACGGGGGTACTATTGAAAACTTccctttaagaaaacaatagttGAAATAGAAATCACTGTCCCTTCTGTTGACACATGCTCAGTCTGATACAGGACCCTGCTTCCGGATGTTTTCACTGTGCAGCGGTTTGCTGTGATGTGAAGGAGCTTCATTGATGTTTAACATAAACCTACCTGTTGTATTAATTAACCCCTTTCTCAACAATACACCAGCTAAGCCAATATACTAATGtatgtgcaagtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtttgtgggcgGGTTTGTTATGACTATGACTGTGAATGCTTGTGAGGGTGAAGGGGTGACAAGTAAAAGGCTACGCAATACATGCCTTCAGGTCTGAGGAACAAAACTGTGGATGCATGAAGTAATACAGAGCAGAGAGAAAATCCGACAGTTGTAGGGGAGAGAGTTGTGCAGTGGGAAAAACACAGTGGCTATTGAAGCATTTGCATTCATCGATCAACATGAAGTGGCTTCCCTCCTGGACACAAATCAGCAGGACTCTTGAGCAAACAGACACCCGTGATATTTGTTGGCATGACATCATCAGTAAGATGTAATTGACAGTAAGCCGCCTGACTTTAATTTAGGGCTATAGGTATGTTGTGGTATGGATGTGTATTAACAGGTAGAGGGGCCCAGTGATGGGCAGTGATGAGAGTGAGGCTGTCTGTGTGGTTGGTGCCAATGTGTGTTTGACTCATACTGCTCCCCCTTTACAGTGATATTATTTACCAAGTCAGTATTTGTTCCtaataaatcaatgttaaaaaaag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154277 lncRNA upstream 100339 13572519 ~ 13590681 (+) True G123043
TU154275 lncRNA upstream 120209 13566414 ~ 13570811 (+) True G123041
TU154271 lncRNA upstream 144720 13546064 ~ 13546300 (+) True G123039
TU154127 lncRNA upstream 385421 13304697 ~ 13305599 (+) True G122929
TU154108 lncRNA upstream 501158 13189282 ~ 13189862 (+) True G122914
TU154415 lncRNA downstream 656795 14353397 ~ 14361536 (+) False AMCG00002437
TU154427 lncRNA downstream 668434 14365036 ~ 14366335 (+) True G123169
TU154429 lncRNA downstream 672491 14369093 ~ 14369913 (+) True G123171
TU154466 lncRNA downstream 995379 14691981 ~ 14692776 (+) True G123197
TU154580 lncRNA downstream 1566347 15262949 ~ 15340169 (+) False G123295
AMCG00002422 mRNA upstream 34462 13655239 ~ 13656558 (+) True AMCG00002422
AMCG00002418 mRNA upstream 179737 13490178 ~ 13511283 (+) True AMCG00002418
AMCG00002413 mRNA upstream 235522 13440937 ~ 13455498 (+) True AMCG00002413
AMCG00002414 mRNA upstream 251826 13430836 ~ 13439194 (+) True AMCG00002414
AMCG00002412 mRNA upstream 284957 13389185 ~ 13406063 (+) True AMCG00002412
AMCG00002424 mRNA downstream 3648 13700250 ~ 13718461 (+) True AMCG00002424
AMCG00002429 mRNA downstream 170512 13867114 ~ 13877797 (+) True AMCG00002429
AMCG00002437 mRNA downstream 631030 14327632 ~ 14360178 (+) True AMCG00002437
AMCG00002440 mRNA downstream 702585 14399187 ~ 14459606 (+) True AMCG00002440
AMCG00002439 mRNA downstream 869797 14566399 ~ 14576984 (+) True AMCG00002439
TU154081 other upstream 561323 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 629335 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1550555 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 1854851 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 1996855 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3261559 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4218834 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 5135412 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5433801 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 6577487 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile