RNA id: AMCG00002425


Basic Information

Item Value
RNA id AMCG00002425
length 1559
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00002425
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13671349 ~ 13678716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTCTCTATGActgagtggagagagagagagagagagagagagagagagcgagcaagTTTTAGTGCTGCACAGAACAAACTGAGGGAATCCCACACCCTGAAGGAGCAAGCTAATTATTAACACAACATGGGCAAGTCAGCTTCCAAACAGTTTGCAGAAGAGGTGTTAAGAAGTCACAATGATTACAGGAAACAACATCAAGTCCCAGCCATGAAACTCAGCAGCAAGCTCAGCAGTGAGGCCAAACAGTATGCGGAGAGCTTGGCCAGCACTCGCATCCTGAAGCACAGTGAGAAATCAAGTCGGGGCGCCTGTGGGGAGAACCTGGCCTGGGCCTCCTATGACCAGCCAGgaaAAGAGGTAGCTGACCGGTGGTACAGTGAGATCAAGAACTATAACTTTAACTCCCCTGGATTTTCCTCTGGCACAGgccacTTTACTGCCATGGTGTGGAAGAGCAGCAGGAAGCTGGGTGTTGGCAAGGCCACTGCCAGCGATGGCTCCACCTTCGTTGTGGCACGATATACCCCTGCCGGCAACATCGTCAACCAAGGCCAGTTCGAGGAGAATGTCCTGCCTCCCAGGAAATGACACGTGCCTCCATgcaccgggggggggggggagccaCAGATAACGGACAAGtggaaaactaaacaaaacaaatgacagtTTAGTTTAATGCGGCTGGCCAACCTTGGTCGTGGAGAGCCACAGTGTCCTCTCGTTTGTGTTTTATCCAGAAGGTTAACAACTTCATCCTTTCAAATATTGGGCTTAATTTGTCAAAATGACCCCTGTGACTAAGGCTATTCAGTGACTGAAGCTGTAGAGAGatctataaaacctgcaggactgtgggcctccaggaacagggttggccaccactgtagtgtagtataatacagtgcagtataacaTTGTGTACAAATTGGGAGACTCGCAAACTTACcgcaaacaaaaatctaaacttGAGTATAGATACATAAGagggaagtgggggggggggcacaccTTGTATAATATTCCACAGATTTTTACTTACAAGACTTACAAAGAACTCCACCTGTTACTGTGTCTTTTACTTTCCTTGAGAAACGGGTTTACATTTTCACCACTAAGATGAAGATCCTAATGTTTGCCACTATGGCTGGGATGCACCTGTTCTTTGGCGTTACTGGTACACCAGGGGACTCTGGAGAGGCTGTGTCAGTGGAGTACATGAGGTCTGATGTGTGACTGTCCTGCCACAGAGAGATCCTTTTATCTCTCGTTTAATGTCACCCGCGACTGTACCTGGGGCGCCGACGCCAGATCAAGATATGTTTTCACTCTGTTTATCAGTATTAAGTTGCCACAGGACACTGTTTGAGTACTACAGTGggttttgttaaatataattttattttgcacgtgtgtgtctgtttatgtaCCTCAGGCTTGTGAGAATTACTCTTGATTAGCTATAAGTCTTTACAGAGACATTAAAACGAAGTGTTCTGTAACTCGAATTTGTGCTAACATTACTGTATCTACAAGCATTAAAAAGTAACATccatg

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24835 GLIPR2; glioma pathogenesis-related protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154255 lncRNA downstream 179732 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 214290 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 259053 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 365754 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 368267 13302120 ~ 13303082 (-) True G122956
TU154403 lncRNA upstream 399528 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 864105 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 887531 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 908498 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 910093 14588809 ~ 14594542 (-) True G123179
AMCG00002421 mRNA downstream 17102 13649227 ~ 13654247 (-) True AMCG00002421
AMCG00002420 mRNA downstream 100591 13537482 ~ 13570758 (-) True AMCG00002420
AMCG00002419 mRNA downstream 139596 13514324 ~ 13531753 (-) True AMCG00002419
AMCG00002417 mRNA downstream 192473 13458483 ~ 13478876 (-) True AMCG00002417
AMCG00002416 mRNA downstream 240965 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002428 mRNA upstream 56 13678772 ~ 13691226 (-) True AMCG00002428
AMCG00002426 mRNA upstream 49894 13728610 ~ 13741394 (-) True AMCG00002426
AMCG00002427 mRNA upstream 78169 13756885 ~ 13758919 (-) True AMCG00002427
AMCG00002431 mRNA upstream 89699 13768415 ~ 13772309 (-) True AMCG00002431
AMCG00002430 mRNA upstream 109827 13788543 ~ 13793190 (-) True AMCG00002430
TU154299 other downstream 17113 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 641943 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 641943 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1664998 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1798487 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 1262544 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3157440 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4243736 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9407278 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 9503205 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile