RNA id: AMCG00002429


Basic Information

Item Value
RNA id AMCG00002429
length 2448
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00002429
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13867114 ~ 13877797 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAAATACCAGCCGCGCCGCTGCCTGCAGAGACGGTCCCCTGTCCTTCCCCCAGTGCAGGCGCTCAGCTGCCGGCTCCGGCGTCTCAGGCTCGGGGTAAGAAGCGGCCGGCCAGCCCTGCCTCCAGCGCCGGCGCGACCCCGGCCAACAACAGCAAGAAGAAGAAGCTGAATTTTCCCGGCGCCGCCGCACAACCTCAGGCACAGatgGCTACAGTGGATTCGGTAGGAGAGAGTAAGTCTATGACCGCTGACCCCAGCACTGTGACCCCTGAGACTACAGTCAAGCCCATGCCATTTAAGGACCCTAACTTTGTGCACTCTGGCATCGGAGGTGCAGCCGCCGGGAAGAAGAACAGGACCTGGAAGAACCTGAAGCAGATCCTGGCCGCTGAGAGGGTGTTGCCCTGGCAGTTGAGCGAAGCCAGCTACTGTAACATAGATGCCCCCCCTTCCTTCAAGCCTGCAAAGAAGTACTCGGATATCTCTGGGCTGCCGGCGAATTACACCGACCCACAGACCAAGCTGAGGTTTAGCTCCACGGACGAGTTCTCCTACATCCGTATGCTGCCCACGGATGCCGTGACGGGGTACCTGGCTCTGCGGAAGGCCAGCTGCATCGTGCCCTGAGCAGGAGCGGGACAGCGGAGGGTCGGCCCAGCACCGAGCGTCAGGCCAGGAAGACTGCAAATGCTCAGCTCTGGAAATTTGCAAgaatactgtaacattttacatgcaTACAGATTTACAAAAGAACTAAATTAATTTCCGATTGTGGGAATTATAAGTAGTCCAGGATGTATTCCCATGGGCCCTCTGTCGCTTAAAATTGCacaccagccagagagagagagagagagagagagagagagagagagaaaaggaggtcGGGACACTCGGTACAGACCTCGAGCCCCGATGCCTCCTGCCGTTCCTGAACTGTACTGTGCCGTACAGACTACACACTGAACCGAGACCAGCCAGTGCACTCGACACTCGAGGCTGGAACAGTCTTTTTAAAAAGGCGTGCTAAATCTGGAAGAACATGTGCAGGCCCTGTTGAAGAGGTCTTTCTGGTCTGTAAACTAATCTCCAGCTTCCACAGAGAAAGCTTCCCaacattcttccaaaagattcATTTAAAACTACTGCTGTATTTTGTTACGTAGAATTTAGTGAATTTCTGTTACTGAAATAGATGCTTTCAGGGAAGTGAGAAGTGGAAGTGAATTAtagaattataatataaaaaggagACATAAGGAAGCATGCTGTTTCAGTATATTGAAGGATATCTGATGCAGATGCACAGGAGTGAATTTCTTGAATTATGAACTCGTCTTTGGATGGTGCCCgttttataaatgcattctCAGAGATGttgcttattaatttatttgttgtgaGTAGAGGGACGGCAGGTTTTCACTAAACGTTATGTGCCGAGACTTCAGAGAAGCTCTCCTCTCCCCAGCATGTTTGCACAGTGTAAGCCTGGTGCTCCTGTGAGTTTCTCATAGCTGTGTTTTTGCACCCCTAGACCAGACGGCCCTTTTGACTGGACAAATTGTGCCTTGTTCGTATACTCTCCCCTGGTCGCACATTTAAATGAACATGGAAAGCAAACATTGCAGCAGCTCAGAAGCTTCTGACCCAGGTCTGTTTGAAGTAGGAGCAGCAGAGAACGTGCTGCCAAAGTCCAGTTTTGAACCGGCAGGAATCGACAGCGCAGTGCGCCACGTGCACTCCTGTTCAGAACACGAGGTACAACGCGCACGGCAGCGATTAGCTTGAAGTTTGGCTTTCgggttttaattaattctcGCTCCTGCTCGAACTTTAGATCTTAATTGCAGCTCTGGTGTGCGACGATTTAGCAGGCAGTGACGCTTGAGTGAACGGTGCTTATAATGAAGTGTAACCTGGGTAAAGGTGGGGAGACGTGCACTGCAGAACAGCTTATCTTGGGGTGCCAGCTGGACTGTGATGTGCCAAGCTTTGATTGACATTTCAACATGTGTAACGGCCGGGTACCTGAAATGAGGGACGCAAATCGGCATGCCATATGTGCAAGTGACGCGTTTCTTAGTAAcctaataatatatttcttttgTAACGAGGAGAGCTTCAAAATATTCAGGATTATAATGGTATGGTGTTGGTTCTTTGTGCCAcacataaatgtattatgtgaTGTTTCAGACCCTTAATCATACAATTTGCAGAAGGCAAAAGGAAACTGTGTGGGTGGTAGAAAACCGTCAGCTTTTGAAAAGAGGAAAGATAATTTCTTCTTACtgtttgtattctatttttCCTACCATGTGTaggaactgatttttttttttttgcttcaaaactgaaatgcagtattttaaacTTGTGACAATTAAAAATCTCTGTTTAGACACGTTTTCTGTATGGGATTTGGAGGGTTAGGAGTGG

Function

GO: NA

KEGG:

id description
K11667 INO80C, IES6; INO80 complex subunit C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154277 lncRNA upstream 276433 13572519 ~ 13590681 (+) True G123043
TU154275 lncRNA upstream 296303 13566414 ~ 13570811 (+) True G123041
TU154271 lncRNA upstream 320814 13546064 ~ 13546300 (+) True G123039
TU154127 lncRNA upstream 561515 13304697 ~ 13305599 (+) True G122929
TU154108 lncRNA upstream 677252 13189282 ~ 13189862 (+) True G122914
TU154415 lncRNA downstream 475600 14353397 ~ 14361536 (+) False AMCG00002437
TU154427 lncRNA downstream 487239 14365036 ~ 14366335 (+) True G123169
TU154429 lncRNA downstream 491296 14369093 ~ 14369913 (+) True G123171
TU154466 lncRNA downstream 814184 14691981 ~ 14692776 (+) True G123197
TU154580 lncRNA downstream 1385152 15262949 ~ 15340169 (+) False G123295
AMCG00002424 mRNA upstream 148653 13700250 ~ 13718461 (+) True AMCG00002424
AMCG00002423 mRNA upstream 170512 13691020 ~ 13696602 (+) True AMCG00002423
AMCG00002422 mRNA upstream 210556 13655239 ~ 13656558 (+) True AMCG00002422
AMCG00002418 mRNA upstream 355831 13490178 ~ 13511283 (+) True AMCG00002418
AMCG00002413 mRNA upstream 411616 13440937 ~ 13455498 (+) True AMCG00002413
AMCG00002437 mRNA downstream 449835 14327632 ~ 14360178 (+) True AMCG00002437
AMCG00002440 mRNA downstream 521390 14399187 ~ 14459606 (+) True AMCG00002440
AMCG00002439 mRNA downstream 688602 14566399 ~ 14576984 (+) True AMCG00002439
AMCG00002442 mRNA downstream 727867 14605664 ~ 14614093 (+) True AMCG00002442
AMCG00002444 mRNA downstream 761079 14638876 ~ 14641950 (+) True AMCG00002444
TU154081 other upstream 737417 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 805429 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 1726649 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 2030945 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 2172949 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 3080364 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 4037639 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 4954217 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 5252606 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 6396292 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile