RNA id: AMCG00002430


Basic Information

Item Value
RNA id AMCG00002430
length 312
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00002430
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13788543 ~ 13793190 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAAGTTTGCCTACTGCAAAGTGGTGCTGGCCACCTCGCTGGTTTGGGTGATGCTAGACATGTTCATCCTGCTCTACTTCAGCGAATGCAACAAGTGCGAGGACAAGAAGGAGAGGGGTCTGCCTGGCCGAGATGAGGTGGTGCAGAAACCCCAGGAAGGGCCAGGGGAGATGGGCAAACCGGTGGTCATCCCCAAAGAGAACCAGGAGAAGATGAAAGAGATGTTCAAGATCAACCAGTTTAACCTCATGGCTAGCGAGATGATCGCCCTCAACAGGTCACTGCCCGACGTCCGGTTGGAGGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154255 lncRNA downstream 296926 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 331484 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 376247 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 482948 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 485461 13302120 ~ 13303082 (-) True G122956
TU154403 lncRNA upstream 285054 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 749631 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 773057 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 794024 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 795619 14588809 ~ 14594542 (-) True G123179
AMCG00002431 mRNA downstream 16234 13768415 ~ 13772309 (-) True AMCG00002431
AMCG00002427 mRNA downstream 29624 13756885 ~ 13758919 (-) True AMCG00002427
AMCG00002426 mRNA downstream 47149 13728610 ~ 13741394 (-) True AMCG00002426
AMCG00002428 mRNA downstream 97317 13678772 ~ 13691226 (-) True AMCG00002428
AMCG00002425 mRNA downstream 109827 13671349 ~ 13678716 (-) True AMCG00002425
AMCG00002432 mRNA upstream 91987 13885177 ~ 13939261 (-) True AMCG00002432
AMCG00002433 mRNA upstream 172920 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002434 mRNA upstream 197716 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002436 mRNA upstream 277595 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002435 mRNA upstream 334614 14127804 ~ 14151845 (-) True AMCG00002435
TU154299 other downstream 134307 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 759137 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 759137 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1782192 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1915681 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 1148070 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3042966 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4129262 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9292804 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 9388731 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU22742 False 1261 lncRNA 0.40 3 NC_053113.1 13099537 ~ 13137068 (-)
mexican tetra (Astyanax mexicanus) TU22742 True 1366 lncRNA 0.52 9 NC_035899.1 6689720 ~ 6800136 (+)