RNA id: AMCG00002432


Basic Information

Item Value
RNA id AMCG00002432
length 7226
RNA type mRNA
GC content 0.44
exon number 26
gene id AMCG00002432
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13885177 ~ 13939261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagaAAAAAGCTAAGGGACAGGAACTCTTCGACCAGATTCTGTATCAACTGGACCTCATAGAATCGGATTATTTTGGATTACAATTCATGGATCCAGAACAAGTTTCGcACTGGCTAGATGTCACCAAACCAATTAAGAAGCAAATCAAAAGGGAGCAAATCAACCTTACTGTTGGGCCTCCGTACACTTTGCACTTCAGGATAAAGTTCTACTCCTCCGAACCCAACAACCTGCACGAAGAGTTTACGAGGTATCTGTTTGTATTGCAGCTCAGACAAGACATTCTTTCGGGCAAgtTAAAATGCCCTTATGACGTTGCAGTAGAATTGGCTGCCTTCTGTCTTCAATcGGAGCTGGGTGACTGTGACCCCTCAGATCACTCCCCAGAGCTTGTGTCAGAGTTCAGGTTCGCCCCCAAGCAGTCAGAGGCCATGGAAATGGACATCTTCCAGCGGTGGAAGGACTGCAGggGGAAAAGTCCAGCTCAAGCAGAACTGTGCTTTCTTAATAAGTGTAAATGGCTGGAAATGTATGGCGTGGATATGCACTTTGTAAAGGGACGAGACGGTTGTGAATATGCCCTGGGACTCACTCCGACTGGAATCCTCGTGTTTGAAGGAGCCAACAAAATCGGCCTGTTCTTCTGGCCAAAAATCACCAGGATGGATTTTAAGAAGAGCAAATTGACTCTAGTTGTGGTGGAGGACGATGATCAGGGTCGGGAGCAGGAGCACACCTTCGTGTTCCGGCTGGACAGTGCCAAAGCCTGCAAGCACCTGTGGAATGGACGGACAGAGTACCAGGCGACTCACGGAGGCAGGCTGAGACGGAAGAGCACTTTTGAGAGGAGGCCCAGCAAACGATACCCTTCGCGCAGGCAGTCTATGGTGAAAGCACACAACCCTGCCAAAGCTGCACACCTCAGTGTGCAGACCAACCCCGACCCTAGCGTTTATCCGTACAAACAGAACATCCCAACCAGCCATGAGCAGTGGCACGCTGCccacatccctctctcctcacaCCTGCCACATCCCGGACACTCGGGCGGCATGAGGCTGCCCCACCCGGAAGAGCTGACGGCACGAGGGTCGCCAACCAGCAAGGAGCCGGACAGCAGATTAATCCTGGAGCAGAACCGCAAGAACTCCAGAACCGTCACCAGCGTGATCTACCAGGACAGCGTCATGACGACACTCTACCCTGTGACCACCGTGCCGCAGCTGAacaacacagagctgcagcagtACAGCATAGAGGAGAACGGAGGGGCGCCCTACACCAGCAAAGTTGGGGGGCGATGTCagcatcaccaccaccaccaccaccaccactctgGATATGGCGTCCTGACCACGGATAGCAATGAGGCCCTGGGAGTGGGACAGTGTGGCAACAAGCTGAACTCGGGGATTACATGCCAATATGAGGAGACGGACGCCCGCCTGATGCAAGGGGAGTTGGAGGGGAGCAAAGCGGAGGAGAAACACCTTTCTGAGAAGAGCCTTCACTCCCCCTCTTCTCCCTCCGCCCTCCCGGACCACCTCAAGTGCAACATCCTCAAGGCACAGATGGATGCTGCGTTCAGAGTGATGAGAGAAGAGGGCAGCCCAGATCCGCGCCGGAGCTCCGCCGGGCAGGAGCACAACGGCAGGTGTCCGGCCACTGCGCAGGAGACAGTGTCCTCCAGTTCAGCGACAGAAAAGAAGGCGGTTCGCCCGGCCCGGACAAAGAGACTGATCCGACAGTACAGCTTTAACCACAGCGATGAGGACGACCTGCCCGCCGCCCTGGCTGCCATCTCCTCCCAGAGCAGCACGGGCAAGACCACCTCTGAGAGCTCCTTCGACGTGCAGATACAGCCGCCCATCTGCCCCAAGAATTCAACTGAAGGCCCGGGGAAGATGTCCCTGGAGCCAGGAGATCTGTTAATGGACTTCACTGAAGCCACACCTCTGATAAAAACAGTACCTTCTGACCCAGCCGATCCCTATTATGATCCATTTCCATCTGTGCCACAATTCCCATTCAGCCAGGCAGAGTTGCAGGTGATGGAGTCTCGGCCGGTCTGCTGTGACCACCCCCTGTCTCCAGCCACACCCCTGCAGGTGTCCCCCCTCTGCCATGGGGCCCGGGGGGCAGGGGACCCAGGGCCTGGCCCCCAGGCGCTGCACCGCCACATGGCACCCCTGGGCAGCTGTGAGGCGCTGCGCCGAGAGCTGGACAGGGAGAAGCTGATGAAGAGACTCCTGATGACGGAGTTGTGACCCCGAGGAGGACACCCGCCCCCACACCCCCTCCTGTGTGCCTTCAGCCCGTTTACATTCCGATGCCTGCATATCAAAGAGCCTCCTCCCTCGGCTTCGACGGTTTtaggttgttttcttttacacacATGAGCACCAACACACGCAATCGCTGACGTTtgcacgcacgcgcacacacacacacacacacacacaaagacaagaGGTCTGGTGATGGTGTCAGCTGAGGAGGTGGCACTCACCTTTAATTGGCACCAAACAAATTGATGAAATGCAATTACAGATTGATTATGAAGATATGTTTTATGCCCCCCATAAAACTGTACAAATCTGCTTTGTCTGTAATGTCACACTGCTGCACCCTACTGTCATTGCCAAGGTGATTGTGTCATGTGACGTTGTAGGGGCAGATTCATGCAAGAAGAGTTTTGTGTGAGTAATCCATTTAgtcttaattgtgttttttcaagtCAACCTGTGTATTTAATTCAAGCAAACACATTGAGTTTTACTTGTTTGCAAAGAGCTTTAATGTGGAGAACAGCAGTGTTTGAGTGTAGCAGTATTACAGCGATGATGACTGCAGATTtagttgtcatttttgtttcattttgatttggtccagtcCTTTCATTTTTAACCGACACAAACATCAGACATCTTCAGCTGTGGAAGAAGGGTGAGTCTTGACAGAGGCTTGcaaacatcatttaaaaaatatatatatattttagtattcatgttaataaacatttaacttaacGTTTTTGTCATCTGTATTACTTCCGTGTAAAAAAGATGAcatcaatacatttgacaaCAAAACTaggttcttatttttattataattattatttgcattttgggGTTTGATTGAAGTTGTTAATGAGTTTTCCAAAGAACAGCAAAAGCAACAATAGAAAAGACGATGTCCAGTCTAGGTTTTGTATGGGGGGGGGtgcaaaaacacaagcagaacAACTCCAGAGTTTTTTGATTATGGGAAGGAAGttacttaattatatgtatgtgtgcagtgtttttaaccaaaatatatcatgtgatcttttttttttccctctcagtCAAGGGGATTGAGTGTGCTTTTTAGATGTATAAAAGGACATCGCTGTGTTTCACGATACGAAACTCTAAAAAGAGCACTTACAGGAAAGCTTGTGATTTCTGAAGCTCTTTACATCTAGCTGATACATATATACGTGGTCTAAACTTCGCAGGTTTACGCGATGCACAAGTTTCTGCATATGCATAGGACTTTATGGCTGAAAGTTTCACAGCTGTTCTTTTCTGAATTGGATGGCAGGCTAAGTGACATGTCCACTATGGGTTTTGTTGTTCTCTTGCAAAGCTGAGCACAGAAAGGGCAAGATTGagcctgcccccccacccccacacacacacacacacactgaacacagatAGGACAAGACTGACCCTGCACTGAGGGTGGAATGAAACCCTGAAGACACCGGCCCTTCAGAGGAGCCAAGAATGCACAAATTCGAAgcgatttgtgtttgtttgcgtTTGATTTTTCCGTGGCTCCTGAACGCAGCTGTGTCGCTATGCTCACAGTGTCAGGGTTGTCCAACAGCTGGGTCAGCAAAGTGTACAGATACGGGTGGAGGGGCGAGCCCAGAGAATCGGGCATGGTGAGAATTCGTCACTGGATCTTTTCATAGCCCAGATACCATCGACATATTTTAATCTGACTCAttataactaaatatatttattttttaatatttcaaaaatgtgttgtgCTTTTGTTCACTATGTGCTTCTGTACCAAATATCAAATGTTAACTAAGAAAAGGGGCAGATGTTATTCTTCTAGTTTTTGtttgggatttttattttggttcgtttgtttgttttctctcccaAAGCGTTTTGCTTTATCTTGCCGGTACTGGAGCCATCATGCTTTAAGCTAGATTTTAGAATTTGCTGTCATAGTGTTTGGAAAAAGGAACAAtgatcttatttttttgtatttgaccCATGTACAACAATCATAATGATCAGAATcagctcatttaaaaatgtcatttttatttcactgttgttGAGAAtgagagatttttttaaatggtacacAGGAAGATGTGTAAAAAATGAAGCAACATAATTTATAcgatttttaaacatatttacatgttatatatcgacattatatgcatttttcCATGTATTAACTGTACACTGtgctaaaatataaattttattgtattgtaaatagtttatgTAATACTGCTCAAACAGAGCTTATTTTCGCACATGGAACATTTTCCtaattgaattgtatattttacaggAAGAAACACTTTTAATACATGTGATATCTGCATCCGTTTCCACTTTACATGTGTACCCAGCGTGCTTTTACACGCCTGCTGTTCTCAGTCTGCTGCCAAACAGAACTTGAATCGCTCATTTAATCGATCGTTTCTTGAACCAGTGCAGAGACAAGTGAAGTCCTGTCTCATTAACACGTGGCAAAGATCTCTTCCAATCTCGTCTCCAACATGGCTGACAAGTGAAGAATGAGATGTGTTTAAAGCTGTCTATGTAGAAAGggattgaagaaaaataatgttaagaTGCACAAaactaatgtttttctttttctttttttcctttatatatattgcaaaaggTTCAAATCTGCTGAAGAGCCATTGTCAGATCTATGTGccaataaatgcattatttcctAATGGCCATATAAAGTATAAAATGCTTTGATGGGTCTATTTTGGTCGTTTGTTTAATATTTGGGACTATGAATGGATGGCTATTATGTCTCCTGTGTTCCTTCCAATCACACAGAGAACagagaacaatatatatatatatacacacacacacacatacagtggtTATAGGACATaatcacccccttggactttttcacattttgtattacagcctgaaattgtgatgcatttaaatgggaggcaagatattttttttaatataacaacagttaataaaaattaaacaaactgaaatgtcttggttagaaatgtattcaccccctttagtccatacttggtagaaccacctttggcagcaatcaCAGCTGTGAAGTCTTTGGGGGTgagtctctaccaggtttgcacaatATTTGCCCTTTTTCTGGCAAAATGGTTCAAGCTCTGTCCAGTTGGATGGGGTTGGTTGGTGGACAGAAATcgtcaagtcttgccacagattctcaatcacAATCAGGTCTAGGCTTTGACTGAGCCACGctaggacattcactttattttttagcCACTCAAGTGGTGTCTTGCTGGCTTCTCTGACTAATGCCAGTTCTGGGTGATGCCATATACCTTTCAGTGACTTGACTGCTCCAAGGATAATCAATcccttttaaatctttttatacCCCTCCCCGGATCTGTGCCTGTTCACATCTTTATCCCAGAGTTGTATTGAGAGCTTCTTGGTCTACATGGTAGTATGTTTACTTTGAATGCTCTGCCCACCTGTGGGAACTTAGATGTagatgtatttaatctgaaccCATGTTaaacacttttattgcacacagctGGACTCCATTCCGTTTATTGTGTGAAGGCAACTGGTTGCACCTGAACatatttaggagtgtcatagcaaaagggttaaatacttaattgatatatttttaacccCACATatctcccccccctcccacatTGAAAGTTTGGAGTAGGTTATGGATATCAAAAGGgggaaaatcacatttaaatgcatcaatatttCAGGTTGCAACACGACTAAATGTGAAATTGTCCAAGGTGGTTGAATACTTCCCATAGCCACTGTATGTGTACATGATCTTACATTATGGATGATTCAGATATGCCTATATGACTACAGTAGACAATAACAAACTGAACCCATGTATTTCAAGTGTAGGGGGTGTTCTCTTTGAACACTGCATTGCACAAATCTGATACACTATGATACCAAAAAAGGGGTTTTCTATCAATTTTATTCACTTACAGGACAACTTAGATCGCTTAGCTTTTGAATCCTTTTCTTTATTGTCATTTCTATACTCCTGACAGCCTGTAATTAATACTTTAGAAGCACCTGCAGAAAAAGCGTCCGTTTCAGTGCTAAGTCTCAGTAAGCAACTTGTCTTGGCTTCCTGGCTGCCTTTGCTCAAGGATGTCAAATTGTAAAATTCCCGTTTTTGCATCTTTTGTAAACATCGTATGTCCAGGGATTATCAGGAAACACCTGATGGCGGGTAAGTGCCAGGGTGACTCAAGTAAAGCAGTCAATCAGACTAGCTGTCATTCTCACAGCCAGTTACACTAGCTGCTTACTGGGTTTTAAACATGCTCTGAATATTCCCCCTGTAAAGAGTCATTTTAACCTAGAATGTGCTGTGTCTGACATAGGGAAGAAGACCATGGCGAAATCATCACTGAATCTCCATTATAAATCAACACACAGCAGTTAGTCCAACACACCATATTTCTGTAATGGTTATTGCACATAATGTCTCTCCCTTAACGTATGTATAACATGCAAACTGccttataaatacagtattcatCATTACCTATTTAAagtctgtattttattcatcATCAACCAAACTATGTTGATGTTTTATGTGAGTTAAAGGTAACGCCACATATATTTGGACACATTTGGACAGACATTCAGGTATGAAACTACATGAATCGTATTGTAAAtatcttgttttcctttccacCTTTTTTCTAAGTTTTCCCAAGTTAAACTTATGTTGTTGAACTAATGATGTTTGCTTTGAATGGAAAGTATACATACTGGGGATAAGTTGTAGAGAATTTCTATCATTTAGCTGGATGAACACTTTAAGGCATCCTACTGTATCAGCATTCTTCTACAACGGCATGATTTTTGTTGAGtcctgtaaaataataaaaacatatttgaag

Function

GO: NA

KEGG:

id description
K21111 EPB41L4B, EHM2, LULU2; band 4.1-like protein 4B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154255 lncRNA downstream 393560 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 428118 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 472881 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 579582 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 582095 13302120 ~ 13303082 (-) True G122956
TU154403 lncRNA upstream 138983 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 603560 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 626986 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 647953 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 649548 14588809 ~ 14594542 (-) True G123179
AMCG00002430 mRNA downstream 91987 13788543 ~ 13793190 (-) True AMCG00002430
AMCG00002431 mRNA downstream 112868 13768415 ~ 13772309 (-) True AMCG00002431
AMCG00002427 mRNA downstream 126258 13756885 ~ 13758919 (-) True AMCG00002427
AMCG00002426 mRNA downstream 143783 13728610 ~ 13741394 (-) True AMCG00002426
AMCG00002428 mRNA downstream 193951 13678772 ~ 13691226 (-) True AMCG00002428
AMCG00002433 mRNA upstream 26849 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002434 mRNA upstream 51645 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002436 mRNA upstream 131524 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002435 mRNA upstream 188543 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002438 mRNA upstream 425794 14365055 ~ 14369820 (-) True AMCG00002438
TU154299 other downstream 230941 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 855771 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 855771 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1878826 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2012315 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 1001999 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2896895 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3983191 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9146733 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 9242660 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile