RNA id: AMCG00002434


Basic Information

Item Value
RNA id AMCG00002434
length 8673
RNA type mRNA
GC content 0.46
exon number 28
gene id AMCG00002434
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13990906 ~ 14043904 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCACTCGGAGTGAAGCTGAAGGCACAGTGATGTCCGTCTCTGTCCTCAAGCTCTGGGTCCAGGTGAGCTCACAAATCCCCACCTGTGATGAGTTGAGGCTGTCGGTTCCCAGGGTGAGCTCCTGTGCCAGAGCAGGCCTCTCAGAGCGAGGGGCTCAGCCGGCGTGCGGTTCCTGTGCTGAAGGGCAGTGCAGGCAGCGTGGCTACCCGACCATAGTGATGACCTCCAGGCTGCGTGTGTTGGGCGGCAGGATCAGCAACATACGGGTATCGGAGCTGCCAAAGGACAAGAGCAGGTCGGAGGTCGTCTGTAATGTGCTGTTCCTGGATGGCTCCGTCCAGAGTTTCAAAATCAGTAAACAAGATGCCGGTCAAATTCTGCTGGATATGGCCTACAACCACCTGGGTCTGACTGAGAAGgagtatttcagcctccagcaCAACGAGGACTCCATAGACTCGCCGAGGTGGCTCGAGCCCAACAAAGCTGTCCGGAAGCAGCTGAAAGGGAGCTTCCCTTGTTCCTTGAATTTCCGGGTGAGGTTTTTCATCCCCGACCCCAATTCATTGTTGCACGAGCAGACCAGgcatttgtattttttacagctCAAGAACGATATCCAGGAAGGAAGGTTAAATTGCCCTCTCAGTTCTGCGGTGGTCCTAGCCTCCTATGCCGTACAGTCTGAAATTGGAGACCACTCGTCCTCTGAGCATCAGCCCGGATACCTGTCTGAATTCCACTTCCTCCCAGAACAGGACGAGGACTTCCTAACCAAAGTAGAGTCCCTGCACGAGCAGCACAGAGGCCTTAAACAGTCCGAAGCCGAGCTTTGCTATCTAAACATCGCCAGGACCCTGGAGTTCTACGGCGTCGAATTGCACAGCGCTAGGGATCCGAACAATACAGAGCTGCTCATAGGAATAGCCTCCGGGGGGCTTGCTGTTTTTCGCAACATGATTTGCACAAGTTTCTTCTCCTGGGTCAACATTATCAAGATTTCCTTCAAGAGGAAAAGGTTCTTTGTACAGTTAAGGCAGAAGCACGGTGAATCTCGAGACTACACAGTGGCCTTCAGCATGCTCAACTACAGAGCATGCAAAAACCTGTGGAAATCCTGCGTGGAGCATCACACCTTCTTTCAGAGCAAGAAGTCACTACCTCAGGACAAAAAGCTGCTGTCCAACTACTGGACCTTGGGCTCCAGAACCCCTGCcaaATCCTTCAACAATCAATTCTGTCGGAAAGTTATCGGAGGCATGGTGTGGAACCCAGTGCTGAGGAAATCGTTGTCCGTGGAGCACCTGGAGACTAAGAGTCTTCCCTCACGCTCCCCGCCAGTCACGCCAAACTGGAGGAGCCCTCGGCTGCGGCACGAGATAAGGAAGCCGCGACACTCCTCCATGGACAACCTGGCCAGCGAGATGAGCTACATCACCGAGACCGAGGACGTCTTCTACACATACAGGACGACCCTCAGCAGCAAGGACAGCGACCCAGAGACGCCCTCCAACCACAGCCCCTGCAGGAAgTCGTCTGAATCAGAATTGCCAAAgaAACTCCTAGAAAACACTGAAGCACAGCCCACTTCGCCCACACCGTCGCAGAACCATTCTCTCACATCCTCCCCCAGTGGCGAGGAGACCCAGGTCAGAAGTCCACCGCAGCGGTCAGGGTCTCACCCTCTGGAGGGACTGGACTCCCAGTTCCTGGAGAGCTACAATAGCGTGACACAAAGCGGCACCACCGATCCGGACTCGCAGTACTACCTGGACAAGAACGAGGTGTTGGATGGGGACCTGCTGCTGGTGCGAATTACCCCTGATGAAGAGGGAAAGTTTGGATTCAACGTCAAGGGAGGGGTGGACCAGAAGATGCCCCTTGTGGTGTCCCGAGTGAGTCCCGATTCTCCAGCTGGGAAGAGCATCCCCAACCTGCTGGAAGGGGATCAGATAGTGCTGATCAATGGAAGAGACATTTCAGAGCACACCCATGACCAGGTGGTGATGTTCATTAAGGCCAGCCGGGAGTCCCACACCAAAGAGCTCGCTCTGCTGGTCAGGCGCAAAGTGGCCATTCTTCACGTGCTACCGGGGCCAGAGGACGAGATGGACTCCTCCATGCTGGGAGACTCAATCCTGCCGCCCTGTCAGCAGTACGGGGAGACCCTTGAAGAGTCCATGGAGCAGCTAAAGAGGGGTCTGCAAAGTGGCACGCTGCTCATTCAGTTTGAGCAACTCTACAGAAAGAAGCCCGGGATGGCCGTGTCATGTGCAAAGTTACCTCAGAACATGGAGAAGAACAGATACAAGGATGTGTTGCCATATGATGTGACCAGGGTGGTTTtggagggagaggaagatgATTATCTCAATGCCAATCACGTGAACATGGAGATCCCCTCGGCCGGCATCGTGAACAAGTACGTGGCCAGCCAGGGCCCCCTGCCGCACACCTGCACACACTTCTGGCAGGCGGTGTGGGAGCAGAACTCCGCCCTCATCGTCATGCTCACCACCCTGACCGAGCGCGGACGGACGAAGTGTCACCAGTACTGGCCAGACCCACCAGAGGTCCACGAGTATGGCCGGCTGCGGACAGGGGAGGAGCGCAGCGTTACACACCTGCAGTACGTGGCCTGGCCTGACCACGGCGTCCCTGACGACCCCTCTGACTTCCTGGACTTTGTGAACTTCGTCCGGCAGAAGAGGGACAAGAGTAACCCACTGTTTGTCCACTGCAGCGCTGGGATTGGTCGAACCGGTGTCCTTGTTACTATGGAGACGTCCATGGAGCTGATTGAGAAGAACCAGCCCGTGTACCCGCTGGACATCGTGAGGACCATGAGGGACCAGCGATCCATGATGGTGCAGACTGCGAGTCAGTACCGCTTCGTGTGCGAGGCCATCCTGAGGGTGTACGAGGAGCGGCAGGGGGGCGGCACACTGGACTGCAGCTAGCTGGGACCCCGAAGAGGAGTGGGAGAGCAGTGGGTGGCGGGGTTCGGCTGCCCCCCGAAACACACGCATGTGACCTGCAGGCAGATGGCTCTCCCATCTAGaaatctagagagagagagagagagagagaaatacggTGACTGAGGCAGAGCACATTAGAACTGTGgcactttaaaaacatgttgggagtactgctactactactactactactgctactactactactactattactactactactgctactactactaggatatataaacatatatgacTTTTATAGCACTATTTGTAAATGTccgtttatttgttttgttttttgttttttgtttttgttttcttgattggggggaaaaatacttttgtacgacacaaagcaaaagaacaaaaacaaatctgaaaacatgttCCCAGTAGCTCTTAGCTGCTCCCAGGATCTGGTGTCTGACTATCTGGATGGGTCGATAGAAAGGACAGCATTGATTATTGAAACAGAATCACCTTAAataatctgttttcatttgatattGTGTAAATATCAGACTGATGCAGCTGTAGTGAAAGACAGACTGGTGCCAACTACTGCTTCAGCCTGGGACAGTTTGAAGGTCTTTACACAATATACGCCCAGTTTGATTCGGACAGGCTGACTTCAGTTTTGTAGAATTTCTTTCTTATCCAATGGGGGACAGCATCCTGACAGAGCTTCTTAGCAAGATGACGATGATTTTGTACTTATTGCTGAAGATACAGTGCTGCTATGTATAAACCCATAGTTCCTATGCTTATTTTCCTAAGCGGATGCATGTTTACTGTTCGGAGTTCAATACCAGGGGCGGTGCCGAGATGGTTTGGCGGAAGGTGCGGCCCGACTCCTTCATTGTCGAGGGAGATTGAGGCTGCTGTTCCCCCCCCAGCTGGGACAGGGCCTTGATTGTGCGCTGCCAGTGTCGAGGTTTCCACAGACACCCAGTGGAGCAATATAGAGCGGGAGATTCGGAAATCAGATTGACTCTTGGGCGATGCACTTTTACCCAGTAACTGTATCAGCCTCTCTACTGGCCAAACAATGTATCCAACTTACTAATggtgacatttatatttatgtataaaggaaatgtgtgtgtgtgtgtgtgtatgtatatatacttacacacacatacatacaggaCACAGCATGACAACAGACTTAGTTGTTATTGTTCTGGGACAAGATGTTTGATACGTAAATTTCGGAATATTAGATTGCACTTTAGATGCAGTGAGTAGCTTTTTACAGCCATCTTATTATAACCAGTGGCAGGAGAGCGATTACAGGGTATTGCGCTGGAGATGGTAGTCCACCTTTTTTTCATGTACAAACTCAACGTGGTTGTCCGTAACATGTAGTGCATACCAAGTCAAGGTCAAAGGTCGTGTGCCTGTAAGCGATACAAGGCCTGTAGGATCACGATACTTGTGTCGGACCATGTGATGTACgttttcagaaacaaattgAACCGCATAAGTAGTTTGTCGTAGATGTTGGTAGAGTTGATGCAATAAACAGCGTTTTCCAGTCACATTTCCTAAGAATTAATACTGGGAAATGTTTCTCCAGCTGGGAACCAGTGCATTCTGTTGTTAATTCCAGTTTGTTTCCAACACTGCTTATTGTGACACAAAGTGTGTGCTCGGCCtctttgtaatttgtactaaGAATGTGTAGTTTTAGAAGGCACTAATATCTCCAAAAGATTTCTGTAACGGGATGTAGAAGGCATAGTTGACACGCATTATCTTTATCATTctattagtttatttgtttgtttttccaaaagtACATGGTGTCTTATGACCGTTCACAAGATGCTGTTGTGCAGCATGGTGTTCGATTAAATACTATAAACAATGGATTGCAGAACAGTAGATTTCTCCCTATTGAATATGTAGTTTCTGTGtatgaattataaatgtaaatagagATATAGAAAGGGAAATGATTCTTAAGTTTGTGCCAAGGAATCCTGCTTGTTCACCTCTTCtggctttattttctttccttgatCAGTTTGTCCTCGGAAAGTGTGTGGGGAAGGACGTGCTGccgagagtgtgtgtgtgagtgtgtgtgtgtttgtgtgtgtgcttgcatCTGTATATGTTAGTGCGTGTGCTATTACAGAGACGGTGGGTCTCCCCTTGAGCTGTGTGTTGAAGATGGTATGAAGGACGCAGAGTCTTGACCGTCTAGAAGCCAGCTGGTAAGGTTGTTTTGCTGTGCTCAGTAGGTATGCCGGTGCTGTCAGTATCTGTGGCTGTAGAGCAGCAGTCGGGGCTAAAGACAAAAAATCACTCTGGAGCCGCACAACATCTTCACAACGTGCCTCCTGAAAGATCAGAGCAGAGATTAGATCAGCTTGGCAGAGAAACCAAGGTGCCCCCAGTGGAATCcttttcatgtgtttaaaaGCATACATATAACCTCTGACCgaacaataacataataataatgattattattataataacaataataaccataatTGACATGGTCTCTCCTGCCTATTTACAGTCTCAACCTtgaaagggaaaagaaaggaaatgttgCGGTGATGCAGGAAGGCAGGGGCAGGGACTGTTTGATGGTGCTGTGTGAACGCGGTGGTCGTTCACAGGACTGAGCACACAGGTGAGCCTGCAGAGCTGTCACCATGGTAATAGAGCTGCGCAGTGAGCAGCTTGACAGCTGTGATTTTTACGACCAGGACTTCTCGcagtgtgtttatttctcttGTATTTCCGTGCAGCCGCTAGTGAGAACCGCGTCGTCCGCAGCGTCTCTGCAGTCACCTGTCTGTGCCGTTTCCTCGAGGCAGGGGACCAGTGTGAGCAAGAGCTCCAATTAAAACGtacatgaatgcatttaaaacaagtaGGTCTCAGAAACGGCATTTTACAGTGCTGCGGTTTGGGTTGATTATGCACATTATGATTATGTGCTCTGATCTGCTTTTCTCACTAGTTTGTTTGACACATAAGGTTGTTTCTCTCAGTTTGCCACTACAAAGCCTAGAAATGACCATGTGACAAGTCTTTGTTACATGTTTTCTCCAGGTCATCAGCCATAAGTGACTGCACAGGCTTTCCTATGGTTTATATCAAAGGGGATTTACTGATTTCATGTAATCTTCTCATTCTTCAGACTCTCTCAAGTCTCAGCCTGTCCAAAGTTGAGTTTGGCTTTGGCTTTGGCTTTGAATGAAACTATCACACTGAGAGTGCCTGAgcacaattcatttaaattatttatcttAATTACACCCTGCAGTGAGCTTTGTgattgatattgtttttttgctcATTATCACTGATGAGGGGTGTTTTTCTCTAATGAATATTTTGGTTCTGGACTGTCCTGGTTCACGTGCAGTTGCTCTCTCATGACACAGAGAAAAGCCAGTACtataataatgcataaataataattctcaTGCATATTTTCATCTGCCTGTGTTCTGAACAACTAATGTTCTCAACCCTTGGCAGCATTGAACAGGgtttcacaaaaaaacaaatcatcattttgtttccttctccctttatttttttatttttttaaggttgtGTTCTCAAGGGCTATTTGTAATTCACTCAGTGTCACAGTTGCATATTTGCCAATGGAAACGTATCAGTGCTCGATCCTAGTTTATTTTTGCACATCTGGCCTAATACGATGACAACAAAATCGTAGCCGAAATGTTTGCTAAATACTGCTGTATGTTTCTGTACATATTAACCCAACATATAGGGTTGAGTAGTGCtgccaaatgtgtttttttctttccctaaTGTGTTGtagagatgcattttttttaattgactgagACTCATTGACTAAAATTAAGCAATAAGATAAGCACTGATGTTAttatgcaacttttttttttatgacactCGTCCAAACTATGCAATGGCGCTTTACTTTGTACCGACTCTTCGTCTTCAAACAAACAATCCCACAAATATCTCGATGAGTCCGTTTCTTTACCCCTGCCATCGCTACAAATCACTCTCTTTCGCCCGGATACGTTTGCACGGATGTTGGCTGCCAACCAACACTGGGACTCAAAGTGTTTCTGACTGTCAGTGAACGTTTGCGATTAAATAACACTCACTGGCAACTTCAAACGGTCTTCCCAAAGACAGTTTGTTGCCCGGCACCAATTGTCTAATATTTTGCAAGGATGGAAATATTCAAAATAGCCACTGTATATTGCTCATAATTAAGAATTATATGTATATCCATCCCAGGTGCACTGCAGATGTTCCATGCATGTTCTCCAAAAAGTGATGTATCTGGTGTGAGTCAATAAATCCCCATGTCCAAGTCATGTGTTGATGCATAGGAAAGCACACCTTAAGACAGAGCTGCTGAAAATCAATCTCCTGTGCAATTTATTCAACTCAGCGTCTTCCCCAGTTTCCACATAGGTAACTGGAAGTGAACTGGGTCAGGCCGATGTATtgctgtgtggatgtgtgtcCATTGGGATGTGTATTTCGGTagagacacactgactcacGAGTCTGCATCTGTGCTGCGAAAAGGCTTTTACTTcgttgaaaaatatatttgaaaagagTTTTAATCAAGGTCCCCTTTTGGAAAGTGTATAAAACAGTGGCTTTGTCTCGGATTGCTCTTTTCAGCACTTAGCTTCTCAACAGCCCCTTCCTGTGTCCAGTCTCCCACTTGTACCACTATGAAGGGAAAATACGATTAATGCAAAGAGCTGTGTCTTCCCTTTACTGTGTCCTAGACCTCTAtctatttccatttccatttcggacacagtctctctctcacatgcaGATAATTGCCAGGTGTCACTTTCATTTCGGTGTGGCAACTGCAGTGAACAAACTGACAAGCAGAGATCTCAAACGCAGGAATGCCTTTGAACTCTCACTGTTTCCAAACGAGTTGTGCTGTGAATTCGTTTGCGTTAAAATCCCACCGTCACAGAGATGCTGTCGATATGCCTTCCGGTGAATCTACTGCTGTTTGTGCTCACTCTCAATTGTGCCATCACCCCAGCATCGTGGCTGTTGTAGACTGGAGACGGTAGCTGGGTGATGCTCAGAGTTTGACTTCCGCTGTAAAGTGTTAATGATTTCATGATTAATACCAAGCTGGCACATGGGGAGCATTACCGTCTATTGATTTTTGTACACTAACAAGTTAATAacctgtttaaaatgattatgcGCCTGTAAATTGATGTTAATATtataaagtttaaattattctttaacattgttatacttttttttcttcctgaatgaatgtaataaacatttttgtaggtttatataatttgtttaaaactgataaaaagtaacaatgttgacatttataatacactttttttgtCGTGGGTTTTGGAGCCGTTCTGTACATGTCTCGGGCTTGGCCTGCTGAAGCTCTTCTGTTTCTACAGAAAAATGAGTTGATGAAATCCTGTTTGCTTACgtgaatacatttattaatgacttaaatgaataaataaacaaatataaagcaCAGCTGTTTACATCTCATCAGACATTCTTGGTTCTAATCTATGGAGAATTCGGAATGGATGAAACATATTCACCTGTcagaaattgtataaaataagcttttcctcttttgtaaaatacattcgTGTCATAACAAGC

Function

GO: NA

KEGG:

id description
K18027 PTPN3, PTPH1; tyrosine-protein phosphatase non-receptor type 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154255 lncRNA downstream 499289 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 533847 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 578610 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 685311 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 687824 13302120 ~ 13303082 (-) True G122956
TU154403 lncRNA upstream 34340 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 498917 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 522343 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 543310 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 544905 14588809 ~ 14594542 (-) True G123179
AMCG00002433 mRNA downstream 24439 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002432 mRNA downstream 51645 13885177 ~ 13939261 (-) True AMCG00002432
AMCG00002430 mRNA downstream 197716 13788543 ~ 13793190 (-) True AMCG00002430
AMCG00002431 mRNA downstream 218597 13768415 ~ 13772309 (-) True AMCG00002431
AMCG00002427 mRNA downstream 231987 13756885 ~ 13758919 (-) True AMCG00002427
AMCG00002436 mRNA upstream 26881 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002435 mRNA upstream 83900 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002438 mRNA upstream 321151 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002445 mRNA upstream 636480 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002448 mRNA upstream 652494 14696398 ~ 14731127 (-) True AMCG00002448
TU154299 other downstream 336670 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 961500 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 961500 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1984555 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2118044 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 897356 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2792252 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3878548 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9042090 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 9138017 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile