RNA id: AMCG00002435


Basic Information

Item Value
RNA id AMCG00002435
length 813
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00002435
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14127804 ~ 14151845 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGACAAAAAAATACCCGTCACCGGCTTAAGAATATTACAGCACTTCAACACCTGCCCCGAGGAGTACACTGTGGTCTTCACTTCTGGATCCACCGCGGCCCTCAAGCTAGTTGCTGAGAGTTTTCCTTGGCGGCCTGCAGATCCCACAGAGCCAGGGAGTCTGTTTTGCTACCTGACAGACAACCACACCTCCGTAGTGGGCATCAGAGGGGTGGCATCTCAGTTGGGAGTACCAGCCATCCCCGTTCAGCTGGAGGAGGTTGAACAGACAGCGCAGGCAACATCTGAGACTAACGGGGCAGCCAGAGAGGGCAACCAGACTCCACATCTCTTCTGCTACCCTGCCCAGAGTAATTTCTCGGGCAGGAAGTACCCTCTGTGTTATGTGAAAGGGATCCAGTGTGGGAAGCTCTACCCCTCCACCAAAAAAACCGGCCGCTGGTGTGTGCTGTTGGACGCGGCCTGTTTGGCCAGCTGTTCCTTGCTGGACCTTCAGGCCCACCCTGCTGACTTTGTTCCCATCTCCTTCTATAAAATCTTTGGTTTCCCCACTGGTTTAGGAGCCCTGCTCATCCGCAATGACACTGCAGGCATCCTCAGAAAGGTCTACTTCGGAGGAGGCACAGCATCCGCTTACCTAGCAGGACAGGACTACTTTGTGCCGAAGGCCTCTGTTGCGAGCAGGTTTGAAGACGGCACAATTTCCTTCCTGGATATCATTGCGCTCAATCATGGCTTTGAGGCGCTGGAGGGGCTCACAGGTCAGTGCACAGAGCTCTCACAGCTTAGGGGTTATCAGTCATCCTGA

Function

GO:

id name namespace
GO:0043167 ion binding molecular_function

KEGG:

id description
K15631 ABA3; molybdenum cofactor sulfurtransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154403 lncRNA downstream 16603 14078244 ~ 14111201 (-) True G123152
TU154255 lncRNA downstream 636187 13487114 ~ 13491617 (-) True G123027
TU154235 lncRNA downstream 670745 13455085 ~ 13457059 (-) True G123014
TU154199 lncRNA downstream 715508 13411499 ~ 13412296 (-) True G122991
TU154158 lncRNA downstream 822209 13303152 ~ 13305595 (-) True G122957
TU154433 lncRNA upstream 390976 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 414402 14566247 ~ 14567067 (-) True G123177
TU154436 lncRNA upstream 435369 14587214 ~ 14588758 (-) True G123178
TU154437 lncRNA upstream 436964 14588809 ~ 14594542 (-) True G123179
TU154473 lncRNA upstream 540125 14691970 ~ 14692999 (-) True G123204
AMCG00002436 mRNA downstream 26405 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002434 mRNA downstream 83900 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002433 mRNA downstream 161337 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002432 mRNA downstream 188543 13885177 ~ 13939261 (-) True AMCG00002432
AMCG00002430 mRNA downstream 334614 13788543 ~ 13793190 (-) True AMCG00002430
AMCG00002438 mRNA upstream 213210 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002445 mRNA upstream 528539 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002448 mRNA upstream 544553 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002447 mRNA upstream 609992 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002446 mRNA upstream 643242 14795087 ~ 14849774 (-) True AMCG00002446
TU154299 other downstream 473568 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1098398 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1098398 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2121453 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2254942 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 789415 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2684311 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3770607 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8934149 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 9030076 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile