RNA id: AMCG00002444



Basic Information


Item Value
RNA id AMCG00002444
length 378
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00002444
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14638876 ~ 14641950 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGACAGAGGAGGCTCAAGACATGTCCCAGGTTTCAGGTGAGATCCTTTTGTGCATCACGGCAGACACGTCCCTCACCAGGGGGGCTCCCTCTCTTCCTGTCAGGCTGATTGACATGGGGGGAGCTGACAACTCTGTCTTAGGAAAGGCTAGGGATAGTCCTCCTGTGAACGATGCCTCTGAGGAGACGGACGAGCCCATGCCCATCCCAGAAGACCTCTCTGCCACCTCTGGCCAGCAGCAGTCTATCAAGAATGACAAAGTGCTAGTGAATTATCCCAGTTTTAATCGAGTGTTGTCATTCGGCACGGCACATGGCGGCCTCAGCACGCTGCCGTATGGCCTCGGCAGGCTGCTGTTCATTATGTTGTGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154429 lncRNA upstream 268963 14369093 ~ 14369913 (+) True G123171
TU154427 lncRNA upstream 272541 14365036 ~ 14366335 (+) True G123169
TU154415 lncRNA upstream 277340 14353397 ~ 14361536 (+) False AMCG00002437
TU154277 lncRNA upstream 1048195 13572519 ~ 13590681 (+) True G123043
TU154275 lncRNA upstream 1068065 13566414 ~ 13570811 (+) True G123041
TU154466 lncRNA downstream 50031 14691981 ~ 14692776 (+) True G123197
TU154580 lncRNA downstream 620999 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA downstream 695638 15337588 ~ 15340169 (+) True G123295
TU154711 lncRNA downstream 1047651 15689601 ~ 15689963 (+) True G123386
TU154713 lncRNA downstream 1152458 15794408 ~ 15795149 (+) True G123388
AMCG00002442 mRNA upstream 24783 14605664 ~ 14614093 (+) True AMCG00002442
AMCG00002439 mRNA upstream 61892 14566399 ~ 14576984 (+) True AMCG00002439
AMCG00002440 mRNA upstream 179270 14399187 ~ 14459606 (+) True AMCG00002440
AMCG00002437 mRNA upstream 278698 14327632 ~ 14360178 (+) True AMCG00002437
AMCG00002429 mRNA upstream 761079 13867114 ~ 13877797 (+) True AMCG00002429
AMCG00002441 mRNA downstream 13903 14655853 ~ 14666224 (+) True AMCG00002441
AMCG00002443 mRNA downstream 44118 14686068 ~ 14686970 (+) True AMCG00002443
AMCG00002451 mRNA downstream 236199 14878149 ~ 14911316 (+) True AMCG00002451
AMCG00002450 mRNA downstream 280472 14922422 ~ 14946523 (+) True AMCG00002450
AMCG00002449 mRNA downstream 309088 14951038 ~ 14962371 (+) True AMCG00002449
TU154081 other upstream 1509179 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 1577191 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 2498411 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 2802707 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 2944711 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 2316211 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 3273486 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 4190064 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 4488453 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 5632139 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile