RNA id: AMCG00002445


Basic Information

Item Value
RNA id AMCG00002445
length 2046
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00002445
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14680384 ~ 14682429 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGCGGCTCACCTGAGTGAGTGGCAAAGGAGGTCCTTTGACATTTCATCTGGCGCCTGCACACCTGAACAGAAGGCAGATGCCTACCGCGCACATGTTCTGCACATCCAGTATGCATGGGCAAACTCGGACATCTCCGAGGCCTGCGCTGGGAGTCTGCTCAGGAAGTACACGGAGCGGTACTCCTCTGTTGTGGACTCCAGCGACCCGCAGGCGGGGCTCAACAACTACGCAGACCACGTCCTGTATCTGTCCAGGTGTCAGAAGAACCACAGCACGCAGTGGGAGCCGTCCCTCACGCTGGAGAGCGCACTCAAGCTGGGGTGCGTGCAGAGCATGATTCAAGCTGGCGCCCAGCACAGGAATTCCCTGGTGGCACCCGCTGATGTGAACATAACGGTTGGGGAGGAGGCCGGTGATAATGCGCACAAAGGCGATCCCAAATCTGCTCCTCTGGCTGTGGCTGGCACTGGAGGCTCGGTGCTCAAACCCAGAGGCGCTCCGACAGCTGGTAACCCCCCAAAGGACGGCTTTGAGAAATGGAACAGCTGCAGTTTGGCCCCCAAGCCATGTGCTTTACCTACCGTTAACAGGCATGCAGGGACATCAGGTACATCTTCCTATTTTAACAACCGGCCTCCAGTCACTCCCCTCTTTGGCAACCAAGAATCACTGGGTCCACCTCCGCCCGGTAACAACCCTACAGCAGGGGGCAACCACCCCTACAGCAACCAGgcagcttttttcccctcttcgaACCCTGCAAAGCGCAAAATGTTCTACGGTGCAGGCGGTGAAAATAGTAGGGGATCTTTCCAGGGATCTGGGAATCATCAGCAGTGTGGTCCAGATTCCAGAGGCTCCTCTGAGGCCAGAAGGCAGGAAGAGAGCCGGGCCACCAGCTTCAGGACGGCGAAGGATCAGTGGTTTGTGGAGCAACAGAAGAGACACAACAACCAGCCCCAGCGAGCCCCACCTGCAGTGTCTGGCGGCGGGGCCAAGAAATCCCTGGGTGCCAACAGGTCGAGGGGAGCCTTCGGAAAGTTTGTGTCCCCCATGCCAaggcaggaggaggaagatTACGGTGGGGCAACATCGACCAGGGTGTCCGGGTCAGAGAATGGTCCTCCAGTGGACGAGCGGCTCAAGAATTTCGAGCCGAAAATCATCGAGCTGATCATGAGCGAGATCATGGACCATGGCCCCCCGATCAGCTGGGATGACATTGCCGGACTGGAGTTTGCTAAGGCCACCATCAAGGAGATCGTGGTGTGGCCCATGCTGAGGCCGGATATATTCACCGGGCTGCGCGGGCCCCCCAAAGGCATCCTCCTGTTTGGGCCCCCGGGAACTGGCAAAACGCTGATCGGGAAGTGCATTGCCTGCCAGTCTGGGGCCACCTTCTTTAGCATCAGCgcctcctccctcacctccaaGTGGGTAGGTGAGGGGGAGAAGATGGTGCGGGCACTATTCGCCATCGCCCGCTGCCACCAGCCCGCCGTCATCTTCATCGACGAGATCGACTCACTGCTGTCACAGAGGGTGGACGGCGAGCACGACTCCTCCCGCCGCATCAAGACCGAGTTCCTGGTGCAGCTGGACGGTGCCACCACCTCCGCCGACGACCGCATCCTGGTGGTGGGCGCCACCAACCGGCCGCAGGAGATCGATGAGGCGGCCCGCAGGCGGCTGGCCAAGAGGCTCTACATCCCCCTTCCGGAGACCTCTGCGCGCAAGCAGATAGTCAGCAACCTGATGTCCAAGGAGAAGTGCCAGCTGGTGGAGGAGGAACTCGAGCGGGTTGTCGGCAGCTCCGAGGGCTTCTCCGGGGCAGATATGACCCAGCTGTGCCGGGAAGCCGCTCTCGGACCCATCCGCAGCATCCAAATCTCAGACATCGCCACCATCCGGCCCGAGCAGGTGCGGCCCATACTGTACTCGGACTTCCAGGAGGCCCTCAGGACCGTGCGGCCCAGTGTGTCCACCAAGGACCTAGAACTGTATGAGCAGTGGAACAAAACCTTTGGCTGTGGCCGCTGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22766 FIGNL1; fidgetin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154437 lncRNA downstream 85842 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 91626 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 113317 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 137364 14542821 ~ 14543020 (-) True G123175
TU154403 lncRNA downstream 569183 14078244 ~ 14111201 (-) True G123152
TU154473 lncRNA upstream 9541 14691970 ~ 14692999 (-) True G123204
TU154664 lncRNA upstream 798715 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 1005026 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 1040504 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 1108176 15790605 ~ 15795172 (-) True G123405
AMCG00002438 mRNA downstream 310564 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002435 mRNA downstream 528539 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002436 mRNA downstream 578985 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002434 mRNA downstream 636480 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002433 mRNA downstream 713917 13966110 ~ 13966467 (-) True AMCG00002433
AMCG00002448 mRNA upstream 13969 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002447 mRNA upstream 79408 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002446 mRNA upstream 112658 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002452 mRNA upstream 229026 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002453 mRNA upstream 293677 14976106 ~ 15005344 (-) True AMCG00002453
TU154299 other downstream 1026148 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1650978 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1650978 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2674033 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2807522 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 258831 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2153727 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3240023 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8403565 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8499492 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile