RNA id: AMCG00002447


Basic Information

Item Value
RNA id AMCG00002447
length 1653
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00002447
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14761837 ~ 14787948 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATCGTTTCAGTGGCCGGGCTGGGATGCTGTCCACACGCAGGGGGAATGTGTTGGACATTGTGGTCGCCTTGTTCTCCGCGTCTCTGGTTTCTTGCTACAACATTGACCTGGAGCATCCCGTCGTGTACCAGGGACCAGAGGGCACTTTCTTCGGGTACTCCGTGCTGGAGCATCACCATGATAATACGCGCTGggtgtTGGTGGGGGCTCCGAAGGCCAACTCCTCCTTCAGCTCGTCAGTGAGCTCCCCGGGGGCTGTATTCAAGTGCCGGGTGCACAGCAATCCCGACAAGCGCTGCACGGAGATGGACCTGGGCAGAGGTAACACTCAGGGGACATCGTGTGGGAAGACGTGCCAGGGGGACCAGGACAATGAGTGGATGGGCGTGAGCCTGGCCAGACAGGACAAAGAGAACGGGAATGTGCTGGCCTGCGCGCACCGCTGGAAGAACGTTTACTACGCAGCTGAGCAAATCCTGCCCCACGGCTTCTGCTCCGTCATCCCCCCCAACCTGCAGGGCAGCACCAGGTCCCTCATCCCGTGTTATGAAGaATATAAGAAGAAATACGGGGAAGAGCATGGCTCATGTCAAGCTGGAATAGCAGGCTTCTTTACTGAGGAGCTGGTGGTGATGGGAGCTCCAGGGTCGTACTACTGGACTGGCACTGTCAAGGTGTTAAACCTGACTTCAAACTCTTTCTACAACCTGAAAAACGAAGTCGTTCACATGTTCAAGATTGACAAAGGGTCCCTGGTGAAGATATTTCAGGCCTCTGGGAAAAAGATGGGCTCTTACTTTGGCTCCTCCTTATGTGCAGTTGACCTGAACAGAGACGGCCTGTCAGACCTGCTGGTGGGGGCGCCCATGTTCAGCGAGATCAGAGATGAGGGCCAGGTGTCGGTCTTCCTCAGCCGGGGCAATggcgtgatggaggagaaggagatCCTGAATGGAGACAATGCCTACAATGCCCACTTTGGGGAGAGTATTGCCATACTGGGGGACATCGACGATGACGGCTTCCCAGATGTGGCAATAGGAGCCCCCAAAGAAGATGACTATGCAGGAGCAGTGTACATCTACCATGGTGACGCTGACGGGATTGTGAATAAATACTCCATGAGGCTGTCAGGACAGAGCATCAACCCCGGCCTGCGCATGTTTGGCCAGTCCATTTCCGGGACTGTGGACATGGATGGAAATGCATATCCAGATGTTACCATTGGGGCCTTCATGTCAGACAACGTCGTACTGTTGAGGTCCAGGCCTGTCATCACAGTGGATATCTCAATCTTCTTGCCGGTCTCCATCAACATCACGGCCCCCGAGTGTCACGATGGCTCCCAGCACCTCAACTGCCTCAACGTCACCATCTGTCTGCTCTTCCGAGGAAAACAGGTGCCAGGAGAAATAGGACTAATCTATAACCTGACTGCGGACGTAACCAAGAAAGAGAAGGGCCAGCCGTCCAGGGTGCTGTTTGCGCTGAACGGAGAGCTGGCCAGCACAGCGAGCGAGATGGTCTCCCTGTCAGTCAACAGTGAGAGGTGTCAGCACTATGTGGCCTACGTCAGGGTGAGTCTCTCTCTGGTCTTCATggttctgtctgtgtgtggcatGGGAACATCATTGGATATCCTTAATTGA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06585 ITGA9; integrin alpha 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154473 lncRNA downstream 68838 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 167295 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 173079 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 194770 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 218817 14542821 ~ 14543020 (-) True G123175
TU154664 lncRNA upstream 693196 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 899507 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 934985 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 1002657 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 1336334 16124282 ~ 16127405 (-) True G123452
AMCG00002448 mRNA downstream 30710 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002445 mRNA downstream 79408 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002438 mRNA downstream 392017 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002435 mRNA downstream 609992 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002436 mRNA downstream 660438 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002446 mRNA upstream 7139 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002452 mRNA upstream 123507 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002453 mRNA upstream 188158 14976106 ~ 15005344 (-) True AMCG00002453
AMCG00002454 mRNA upstream 272899 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002455 mRNA upstream 550139 15338087 ~ 15362568 (-) True AMCG00002455
TU154299 other downstream 1107601 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1732431 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1732431 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2755486 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2888975 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 153312 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2048208 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3134504 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8298046 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8393973 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile