RNA id: AMCG00002448


Basic Information

Item Value
RNA id AMCG00002448
length 1419
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00002448
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14696398 ~ 14731127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGAAGTGAAAGACGTGTTCTCTCCCATCGTGTTTGAAGCTGCCTACAGCCTGGGACCACATGTGATTGAGAACAAGGACGAGAAGGACAAGGAGCTGCCGCCACTGATGCCAGTCCTGCGCTGGAAGAAAGGGGACAAGATTGCTCAGAGGAATCAGACTTGGTTTGAGAAAAACTGCTTGTCTGAGGACTGTGCTGCAGATCTCAGGTTGCTTGGCAAGCTGCTGCTCTCTGGTGTGCACAGCCGACCTCACCTAGCCCTGGGAGGGGTGAAGAATATCTCGTTGAACTTGTCTATCTCCAACGCCGGGGATGACGCTTACGACACTAACATCTACTTCAACTTCTCCAAAGAGCTCTACTTCATCAAGATGTGGCAGAAGGAAGACAAGGGCATTTCCTGCGAATTGTTGGAGCTGGACTTCCTGAAATGCAGCGTGGGATTTCCGTTTATGAGGGCGCAGACCAAGTACCACTTAGCCGTGATCTTTGATACCAGCCACCTTTCTGGGGCCGAGGAGAACTTGGCGTTCCTGGTCACTGCACAAAGTGCAAACCCAGAGCACGAGAGCAAGCTGTCAGACAACACTCTCCTCCTGTCTATTCCTCTCGTCCATGAAGTGGATACAGCAATCACAGGGCTGATCTCGCCGACCACCTTTGCTTATGGGGACTCGATTGACGCATCCCATTTCATGCTGCTGGAGGATATGGTGTGCCACTTTCAGCCTCTCAACTTCACCTTCcagGTTATAAATAACGGGCCGAGCAGTCTCCCGGGCTCCACTGTTCACATCAGAATTCCCAACCGGCTAGTTGGCAGCGGGGCAGACATGTTCCATATCCTGGACACGGAGGTTGTTGAAGACAGAGGGAACTGCACCTTCCACAGAAACCCCACCCCCTGCAACGTCCCTCAGGACAAGGAGAACATCTTCCACACCATCTTCTCCTTCTTTACCAAGTCTGGGAGGAAAGTCCTGGACTGTGACAGACCCGGACGATCCTGTCTAATGATCACTTGCCACTTAGGCTCATTAGCAAAAGAAGAAACGCAGAACATTGACGTCCGAATGCTACTGAACACGGAGATACTGAAGAGGGACAGTTCatcggtcatccagtttgtgACGAGGGGCAGTGTGATGGTGGACAACAGGGCCGTGGAGGTCCCGAATGGACTGCCGGAAGACACTTCCGTGATGTTTGAGGCACTACACAATCAGGAGCCCAGAGGCTATGTGGTCGGCTGGATCATTGCCATCAGTCTCCTCATAGGAATCCTCATATTCCTGCTGCTGGCAGTGCTGCTCTGGAAGATGGGATTCTTTCGTCGGCGGTACAAGGAGATAATCGAGGCGGAGAAGAACAGGAAGGACAGCGATGAGAGCTGGGACTGGGTCCAGAAATCCCAGTGA

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0001525 angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154473 lncRNA downstream 3399 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 101856 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 107640 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 129331 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 153378 14542821 ~ 14543020 (-) True G123175
TU154664 lncRNA upstream 750017 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 956328 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 991806 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 1059478 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 1393155 16124282 ~ 16127405 (-) True G123452
AMCG00002445 mRNA downstream 13969 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002438 mRNA downstream 326578 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002435 mRNA downstream 544553 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002436 mRNA downstream 594999 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002434 mRNA downstream 652494 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002447 mRNA upstream 30710 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002446 mRNA upstream 63960 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002452 mRNA upstream 180328 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002453 mRNA upstream 244979 14976106 ~ 15005344 (-) True AMCG00002453
AMCG00002454 mRNA upstream 329720 15060847 ~ 15111866 (-) True AMCG00002454
TU154299 other downstream 1042162 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1666992 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1666992 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2690047 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2823536 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 210133 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2105029 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3191325 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8354867 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8450794 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile