RNA id: AMCG00002453


Basic Information

Item Value
RNA id AMCG00002453
length 3254
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00002453
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14976106 ~ 15005344 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAAGAGGCGCATCTCTGAGGGAGCAGACGCGGAGAGACTGCCTTAGTCTGCGTTTGCACTCATAGCTCCAAAgtctctctttttcttattcgtggttgttttaaaattagctgcttttaacttttttgtttgtctatCAGAGAGATATAAATCAATTTGTCACTTATACTTtgtactactactgctgctaggACTACTCCAGACTTGGGCAGTAGTGAGGGACATGCCGCCCGACAGGCGGGTCTGGGTTTAGGGACTTGTCTCCACAGCCACTATGTAAAGCGATACGGGGGAGTCTCGGAGAGCAAAAGCAGCAGAGAGGGGCTGAAGAACTGGGGCTGTCAGACCAACATGATCCCCCCAGCCAGCCACATGCTGGAGGAAGACAgcatggaaaaggaaaatgaacGACAGCCGGAGATGCCTCAGTCTCCCGCGTCCACCGCCAGCCAGCAGGAGTCAAAGCTACAGAAGCTGAAGAGGTCGCTGTCCTTCAAGACGAAAAGCCTCAGGAGCAAGAGCGCAGACAACTTCTTTCACAGGACTAACAGCGACGTGAAGCTACAGGTGGACCTGCTGTGTGGCGTCAGCACCAGCACCGGGCAGCTGGCCACTTCAGACAGCCACTTCTCGTCCCCCACCAAAACCCTGAAACCACCCGAGGCCACGGTCCATAGCTTCTTAGAGCACATCTTCAAGAAGCCCACGTTCTGCGACGTCTGCAACCACATGATTGTCGGCTCCAATACCAAACATGGTCTTCGCTGCAAAGCCTGCAAGATGAGTATCCATCACAAGTGTGCAGATGGCGTTGGACCACAGCGATGCATGGGCAAGCTGCCGAAGGGATTTCGCCGCTACTACAGCTCCCCGCTGCTCATCCAGGAGCAGTTCAGCTGCATCAAAGAGGTGATGCCTATTGCGTGCGGCAGTAAAGTCGATCCTGTGTATGAGACTCTGCGATTCGGGACCTCCCTGGCACAGAAGACCAAGAAGTCCAGCACGGGGAGTGGCTCTGAATCACCACGGCGAAGCTCTAACACTGACTTGGCTGAGGTGCCCGAAGAAGTGGATGCCCAGAGCAGCCTCCCAGAGCACACCAGGAAGCACAGTGACAGCGTATTTACTTCGCTAGAAAATGGAACAGAGCATTTCCACTCTGGAGAGAAGAAGCAGGAAGAATCCCCGGTGAAAAGACAACAGCGAAAGGATATATTGCAGCTGAACACCTATGTGGCCTTGTACAAATTTATACCACAGGAGAATGAAGACTTAGAAATGAGGCCTGGAGACCGAATCATATTAGCAGATGACTCCAACGATGACTGGTGGAAGGGTGTAATTGAAGACAGAATTGGATTTTTTCCTGCAAACTTTGCTCAGCAGGTGAGGGCAGGTGAGAGGGTTTACAGATGCACAAGGACTTTCATTGGCTGCAAAGAACAAGGACAGATAACACTGAAGGAGGGCCAGATTTGTGTGAGCGGCGAGGAAGAGCACCATGGCTTCATTAAAGTGTCTAGTGGAAAGAAGAGAGGATTTGTACCGTTTGATGTCTTAGAAAATGTTTGATGGGGTGCAGTCCCAGAGACGCGGAGCAGTGACGCTCACCCTTTGCCGGCAGCTCTTTTGCAGACCGCGATGAACGCTGAGATCCAGACGGAAAAACCGCCACGGGAATTTCAGGAGATAAGCAAAGTGGAAAGCACTGTTGGGGGATACAGGTGGACCAGAATTCCCACAACAACACAATGAAACTGTCCTCACTGCAGGGTTTTCTGACTGCCTCTCTGTTCCTTAGCTAAGAAATGGCAAGGAGAAAAGAGATTATCATGCTTTTGGGGAAGCAGAAACACACATGACTTTGTATGTGTGAGCCGTGTCTAAATCCAGGCTGTgtcctgtttttgtgtgttatttgtttcaGTATGGGAGGATTATACTTGACTTGTCACTTAGACTGTCTCTGAGAATGGGGAACAAAGACGTACCAATGTGGTCTCTTTGCTGTCTGGATGCACACAGATGCTTTACAGTTCTGAGGCAAGATTTTAGCACCTGAGTATTTATAGCCACAGAGAACTAGGGACTCCGTCTGTGTGAAGTATGTGTGTGGAAGACTTGCAGAATAGCTTCTAAAAGGTACCCGATATTTGTTTACAGAACttttttcaacaaatatttCTAAATTTATATATTAGATGAGATGTCTTTATTTAGGGTTGGTttgatatatattcttattaagGCTACCCCACCTGTTGAAACTCTATTAGCACCATAGCTTGTGAATATCAGATAGTAATGGCCAATGGCTTTAACGttcagagatttattttagtttcatcaaATTTATAGTCAATTGACTTAAGCTTatattaaagataaaaacattcaaatgagtCCAGTGTATTAAGTTAGTTGAGAACTGGCACTTACATTTATACCTATATAGAGCATCTGTATGGCATTTAAATGTGGAATATTTAAACAACTGATATATGAATCAAGGGGTTTATGAAAATTAACAAAGGCTCTTATAAGCAAATATCAATTATCTATATCTGCTGTATataagatgttatttttttcctctctgatCAGCAGTCGTTTCTTTGGGGAGCAGTATTGTTCTTTTAACTACTTTTGTTTCTCATTGTTTGACAAAGTCTATTCAGGGAAAAGTGGATagagaaataatgtattcatttctaGTTCTAgaatgttacaaaatataaatgaaattcTTCAAGAGCTCTGATTGTTACTTTCTGATTGGTTTTTAACTTGTTATATCAGTCTCTGCAGTCCTGAAGATGATTCTATAGTTTTTCTtggtctgtctgtttttcttttcttttcctagCTTTCTGCAGTTTCTCTATGTCCTTGTTTAAACTCACAGATAATCTGCTGTGCtgtagcatttgtttaatttgtgttcatcTTTAGGTTTCTATTAAAAAAGGtttgatagtgtgtgtgtaacatgACAATGCAAAGATGAGAAATACAACTGTTACAAAagcctttttaaatgtcacGGACTTGGCAttaaatttctttaaaaaaatatagagagagattGGTGTATCTGTACAGATATGTGCAGCCATAAATTTAAAGCTGTCCTTCACTTAGCTGTCCTTAAGTAGCAGATCTGACATGTTTGAAGTGTAAAATTGTGTAAAACCTCTTGGCCTCAAGGCAAACATGAGTTATACTGCAAAAAGAAGCCTAAAGGATATGTG

Function

GO: NA

KEGG:

id description
K23711 STAC; SH3 and cysteine-rich domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154473 lncRNA downstream 283107 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 381564 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 387348 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 409039 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 433086 14542821 ~ 14543020 (-) True G123175
TU154664 lncRNA upstream 475800 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 682111 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 717589 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 785261 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 1118938 16124282 ~ 16127405 (-) True G123452
AMCG00002452 mRNA downstream 55601 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002446 mRNA downstream 126332 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002447 mRNA downstream 188158 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002448 mRNA downstream 244979 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002445 mRNA downstream 293677 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002454 mRNA upstream 55503 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002455 mRNA upstream 332743 15338087 ~ 15362568 (-) True AMCG00002455
AMCG00002460 mRNA upstream 503104 15508448 ~ 15534012 (-) True AMCG00002460
AMCG00002463 mRNA upstream 601697 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002464 mRNA upstream 620854 15626198 ~ 15630089 (-) True AMCG00002464
TU154543 other downstream 29795 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 1321870 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1946700 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1946700 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2969755 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 1830812 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 2917108 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8080650 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8176577 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 9256221 24261565 ~ 24261823 (-) True G124829

Expression Profile