RNA id: AMCG00002455


Basic Information

Item Value
RNA id AMCG00002455
length 4683
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00002455
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15338087 ~ 15362568 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGGGGGCGTTGACGTCACTGACGTTTCTCCCGCAGTACCCAGGAAGTAGCGGCGCAATTGTTGTTTCGACAGAtttcttgtttctctgcttGTTTTGTGAGTCGGGAATGGCGACGTTTATTTCAGTGCCGTTAAAGAAGTCGTCCGAGGTGGACTTGGTGAAACCTCTGTCCAAGTTCGTCAGCGCCACATATGGGGGCTCAGAGGAGCAGTCGGAGTATATTCGGGCCGTGGAAGAGTTGAACAAGCTGCGCAAAAGTGCACTCGGGAGGCCGCTAGACAAACACGAAAGCTCGCTGGAGATCCTCCTGAGATACTATGATCAGCTGTGTGCTGTTGAACCCAAATTTCCCTTTTCCGAGAACCAGttgtgtttAACCTTCACATGGAAAGATGCATTTGACAAAGGTTCCCTTTTTGGTGGCTCTGTCAAGCTTGCCCTGGCTAGTGTGGGATATGAGAAGAGCTGCGTTTTGTTTAATGTTGGAGCCCTGGCCAGCCAGATTGCCTCCGAGCAGAACCTGGACAATGATGAAGGCCTGAAGGCGGCTGCAAAGTTTTATCAGCTGGCCAGCGGGGCCTTCTCCCACATCAAAGACACCGTGCTGTCCGCTCTGAACCGCGAGCCCACCATGGACATCTCCCCAGACACTGTGGGAACCCTGGGACAGATCATGCTGGCCCAGGCGCAGGAGGTCTTCTTCGTCAAAGCCACGTCAGacaaaaTGAAGGATGCCATCATTGCAAGGCTTGCCAACCAAGCTGCAGATTTCTATGGGGACGCCTTCAAGCAGTGCCAGTACAAGGAGAACTTGCCCAAGGAGGTGCTGCCAGTTCTGGCTGCCAAGCACTGCATCATGCAGGCTAATGCGGAGTATCACCAGTCTCTCCTTGCCAAGCAGCAGAAGAAATTTGGGGAGGAGATTGCCAGATTACAGcATGCAGCGGATTTGGTGAAAACGGTGGCCTCTCGCTATGATGAGTACGTCAATGTGAAAGATCTCTCCGACAAGATTACACGTGCCCTGACTGCTGCGAAAAAAGACAACGACTTCATCTACCACGACCGTGTTCCAGATCTGAAGGACCTGGACAGCATTGGAAAAGCCGCCTTAGTAAAGGCCACAGCAATACAAGTGCCCCTGAGCCAGAAGTTCACAGACCTGTTTGAGAAGATGGTGCCTATGGCTGTACAGAAGGCTATGAGCATCTACAACCAGAGGAAGGCTGAGATTGTCAACAGGCTAATAGCACAAATGAGAGAGGCAACAAATCTATGCAATGGAGTGCTGGCGTCGCTGAACCTGCCGGCTGCACTGGAGGACCTCTCTGGAGACAGTGTCCCTCAGTCGATCCTGGAGAAGTCGAGGGCCGTCATCCAACAGGGGGGCCTGCAGAACATTGAACAGCTGATCCGAGATCTGcctgagctgctgcagaggaaCAGAGAGATCCTGAATGAGGCATGTCTCCTTTCTCACAGTTCTCTGAAAATATTGGATGAAGAAGAAGCGACAGATAATGAACTAAGAAACAAGTTTACCCAGCGCTGGCAGCGAACCCCTTCCAGTGACCTCTACAAATCTCTGAGAGCAGAGGGAACAAGTTTCAGCAATGTTTTGGATAAGGCCGTGCAGGCAGACAAAGTGGTCAGAGAACAGTACAACACCCACTGCGAGATGATTGCCCTGCTCTGCAAACCTGAGGCTGAGCTCAATGCTGCTATTCCCTCCGCCAATCCAGCAAAAACTCTGCAGGGCAGCGAGGTGGTGGGTGTGCTCCGGTCCCTGCTGGCCAAGATGGATGAGGTGAAAAAGGAGCGCGAGCAGCTAGAGAACGACATCAAGTCCGCGCAGTTTGACATGACCACCAGGTTCCTCACTGCCCTAGCTCAGGACGGCGCCTTAAATGAGGAGGCTCTCTCGGTGACCGAGCTGGACAACATCTACGGTGGATACACCCAGAAGGTCCAGCAGAGCTTGAAGACCCAGGAGGAGATTCTGGGGAATGTGCAGACATCCCACCAGGAGTTCTCCACAATGAAGCAATCCAATTCAGAGGCCAACCAAAGAGAGGAGGTGATGAAGAAACTGGCCTCGGCTCATGACAGCTACATCGAGATCTCGAAGAATCTGAGAGAAGGGACCAAGttttataacgATCTCACAGAAATCCTGCTGAAGTTCCAAAACAAGTGCAGTGACATTGTTTTTGCACGTAAAACGGAACGAGATGAACTACTCAAGGAGCTGCAGCAGAGCATCGCCCGTGAGCCCAGTGCTCCCTCTTTCCCTTCCGTGCCCGCGTACCAGTCCAGCACTCCCAGCCCTGCTGCCAGCACCGGCCCCAGCATCCCCACACCGGCCCCGAGAACCATGTTTcaGAGCTCTTCTCAGCCCCCGGCACGCCCCCCGCCTCCTACATTCTCTACTCCAGCCACCAGCACCACCCCGAGCACCACCCCGAGCACCAACGTGCCCCCCCCAGCTGCGGTGCCGACCAGCGCAGTTCCTCCCCCTGCCAATCCATCGATGGTTCATCCCGGAGCCCCCTCACAAGCGCAGGGTCCCCCCTACCCAACATACCCGGGATACCCAGGGTATGTCCCGATGCCCATGGGCTACAATGCCTATGCTTATGGTCAGTATGGTATGCCGTACATGTACCAGACTCCAGGACAAGCACCTTTTCCTGGGGCCCAGCAGCCCCAGCAACACCCTTACCCCTACCAGCAGCAGccccagcagccccagcagccccagcagcCCTACTACCCCCAGTAGTAAAGCACTCCAGCTGTGGGGATGCACTTAGACCAATAACTGCTTTTGTCTACCTTACTTTGGTTATTTCtccaaatgcaattttattatttctctctgcTCTAACATACCTTTCTATTGTTTGTCTGTtatttgctttgtgtgtttttttttttttttttttttttttNNNNNNNNNNGCTCATAGCACTACAGGACTGTTTTGCTGGTATAACACTAGGGTGGACCTCCGGATGCAATGTTGTGTACTAATTCCAATTTAAATAGGTATGCTCAGTCAATAAGAGTCCTTCTTGTCTCAGAGAGATCCCTCGCAAAGGGAAGACTGACATTAATTTTACTGCAAAGATTCACTTTTGcaaatagattttgttttcttaagacGAATGCCGGTAcatactgtaataaaacaaactttgttCTCTGTAGATGTTTTTGTTCTAGAAAATTATTTTGGGGACTGGAATTCTGACATCTGAGAAATACTTTATACAGACTACGGTAAAACTGACTATATTTGCTCCTTTAAAGCTGTATGTTGGTTATCTATATCTGCTATTTTCTCTTACAATCAATGCCTTGTAAATCacacagttaaattaaaaaatatataaaattccATTATTGTTAATAGaatcatatgtattttttttttctgggcaAATTAAGGGATTACTGTACATTGGTCGTTTCcagacatacattttttctgtgtgATTTCTGGTTGACGTTTTTGCTTAAATAAAAGGCAGATAAGCTGTTTCATTAAGGATGGCTTTGCAAAGGGTTTTCATAAGAAAATGTCTAGGAAGTGTACAGAGGAAGTTACTTAAAACTCAATTGGGAGTGACTTGAGATCTTTAGATGATATACCAATGGATTTGTCTTCCTCTTTAATATTTAAGCTTTCCCCCAATGCTTACTGTTCCTAGCATATGATAGTCAAGATTGACACCACAAAAGAGAATTACACAGAAAACATACAGGATATAGAAATGAAATAACATGTAACTGTGAAAGGTGTACACTACTCTTGTAAGCACAGTACAGATACTAGGAGCTGGATTGAGGGTAATTACTTTCCTTCACAACAGCCGCTACCTTTGAATGGTTCCAACGATTCTGAAAATTTGAGTGTTCTGGAGATATGTTCTGAATGCTCTGTTAATAGGCTGTTAGCTTCTGAAAATAGAAGGCAATCCGAGAGAAGGTATTCAGTCTTCTATTATAACCTGAATACTACTATGTACagaaaaaatcataaaaaaaataatcataataatcgtGACTGCTTcactaataaataatttcatcTGGGAGAAAATCTTTTCGTTTGTGTGCTTGCTCCCTTTCTGTGTTAATGCAAAGGTTCTACTTTGTATtatctgagtttttttttttcttcccctcaatTATTTACTGCTGACTTAAAGTTCACTGAAAAGGGTTatgcaattgaaaatgttttcttgaatgGCAGTATTAACCCTTTGAAAAACATCAGCCATTAATATTCAAAGCTGTGAATAATTGATCTGAACTTTGCGTTTCTAGCCTTCACCAGGCGGACgtttttaaaaattgttaaCTAGTcttatagtttgttttgttgtcaccATGATGACTAAAAATCCACATTCTCTAAAAACTCAAGTCAACTGCAGgtttaatacagtataatttaataaaggcAATTATTTACCCAAGTGCAAGGACACTTATCTTTCCCAATTCATTAAaagatttatttacagttatatatatatatgtctttattATACCTGTCTACTTTGAAATGTCATTAAAGGTCAGCTGGTCCCCACTTTCAACAAAAAGGAGTTTGAGAATAAATGtcttcaccttcaaaatcacatcaCAAATGTCAGGACACTTCATTG

Function

GO: NA

KEGG:

id description
K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154473 lncRNA downstream 645088 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 743545 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 749329 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 771020 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 795067 14542821 ~ 14543020 (-) True G123175
TU154664 lncRNA upstream 118576 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 324887 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 360365 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 428037 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 761714 16124282 ~ 16127405 (-) True G123452
AMCG00002454 mRNA downstream 226221 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002453 mRNA downstream 332743 14976106 ~ 15005344 (-) True AMCG00002453
AMCG00002452 mRNA downstream 417582 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002446 mRNA downstream 488313 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002447 mRNA downstream 550139 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002460 mRNA upstream 145880 15508448 ~ 15534012 (-) True AMCG00002460
AMCG00002463 mRNA upstream 244473 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002464 mRNA upstream 263630 15626198 ~ 15630089 (-) True AMCG00002464
AMCG00002470 mRNA upstream 460661 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002472 mRNA upstream 476311 15838879 ~ 15923127 (-) True AMCG00002472
TU154543 other downstream 391776 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 1683851 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 2308681 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 2308681 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 3331736 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 1473588 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 2559884 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 7723426 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7819353 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8898997 24261565 ~ 24261823 (-) True G124829

Expression Profile