RNA id: AMCG00002460


Basic Information

Item Value
RNA id AMCG00002460
length 4341
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00002460
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15508448 ~ 15534012 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGAGGATTTAAaatatTCTCCTATCTGGATGTGGTTACACTGTGTCGGTGTGCCCAGGTATCCAAGGCCTGGAATGTCTTAGCATTAGATGGAAGCAATTGGCAAAAAATAGACCTGTTTAACTTCCAGACCGATATAGAGGGCCGTGTGGTGGAGAACATCTCCAAACGCTGTGGGGGCTTCCTGCGCCAGCTCAGCCTGCGGGGCTGCCTCAGTGTGGGGGATGCCTCCATGAAaacttttgcacagaactgcagaaacaTCGAACACCTTAACCTTAATGGTTGCACAAAAATCACTGACAGCACATGTATTAGCCTTAGCAAATTCTGTTCTAAACTGAAACATTTGGACTTGACATCCTGTGTGTCTATAACAAACAATTCTTTAAAGGCATTAAGTGAGGGCTGCAGGACTCTAGAGAACCTGAACATTTCGTGGTGTGATCAGATCACTAAGGACGGCATCGAGGCTCTGGTGCGAGGATGCGGGAGTCTCAAGGCCCTGTTCCTCAGAGGCTGCACACAGCAGGTAACAGACGACGGTTTAGTCAGTCTATGTAGAGGATGCCATAAACTTCAAATCCTGTGCATCTCTGGCTGTGCGAACATCACAGACGCCTCCCTCACAGCCCTGGGCCTCAACTGTCCCAAGCTGAAAATCCTGGAGGCTGCAAGGTGTTCCCATGTGACCGACGCCGGCTTCACCGTTTTAGCTAGGAATTGTCACGAACTGGAGAAGATGGATTTAGAAGAATGTATTTTGGTTACAGATAACACACTGGTTCAGCTCTCCATTCATTGTCCTCAGCTGCAAGCTCTGAGCCTGTCCCACTGTGAGCTCATCACGGACGACGGGATCCGGCACCTCAGCAACAGCACCTGCGGTCACGAGTGGCTGCAGGTGGTGGAGCTGGATAACTGCCCCCTCATCACCGACGTCACGCTCGAGCACCTCAAGAGCTGCCACAACCTGGAGCGCATCGAGCTGTACGACTGCCAGCAGGTCACGCGGGCTGGCATCAAGCGGATCCGGGCACACTTGCCAGAGATCAAAGTGCACGCCTACTTCGCCCCCGTCACACCCCCGCCCTCAGTGCACGGCGGGGGCCAGCGGCTCTGCAGGTGCTGCATAATTCTTTGACAGCGGCAGGCTGAGGGGGCAGCTCTGTGTGCCGTACTGTTAGTGTGAATGATGACTCCAGCGCTGGCGATGATCTCGAGCCCTCCTGCCTGCGGGGAGAGAGCTGGGAGGAGGGGGCAGCATGggggaggaggatgaggaagaggagagagaccTTGCGGAGGAATGACGATGCCGGCTGGACGCCTTTCTCTCGAGCTCACGtccccacccaccccaccccgtGTGCTGAGGAAGGCAGGGGGGGTCGCAGCAGCCAGTGAATGAGGAAATATGAACCTTCTgcttaacaagaaaacaaaacgaCGACTACAGCGACAGCACATTTCCTTGTGGAATATCGGCCAATGCTTCCATTTCAATGAGTTTGTTCTTTCAGTCCAAGTACCcttgtgttgttgtgctttttACGGTAATGTAACAGTGGTATCAGGGTAGCAGCAGAGTGCTGAACTTTATGGTGAAGCAGTTTGTAACGTGAAGCATTTGACTTGTGTTGGTGAATCGGTGGGGTGTTCTGGGAGCCGGGGGCCAGGGTGGCTTCGTGATGGAAGCGCTGCGGAGGAAGGCTCTTTGCTCGCTGCGTTTTCTTtcttgtggggaaaaaatgagGTGAGgggatttagttttttctcatgATTGTGTTTAACAAGGACACCTGGAGTAATTCAAAGCTGAATATAATTGTGTGCATCCACGAGCTATCCGTTTTTCACaaggatatgttttttttttggttttgtttttgtttttttgcattggcaaaaaaacaaaaagtgacaaAATGGCAAATTGTCTTTGTATTCAAATTGGAGTTCAGTGATATTTCTTTATGCattcagttttgtcagtgcTAATTGTTATTGTCCAAGCTTTGCTTTTctgggggtaaaaaaaaaaaaaaaaaaattacagcatGTTAACTTTGAATGAAACCTCCCCTTTGGAAAAGGCTGGACATTCCAACGCAGTGACTGATGTCGCTTTCAAACTCTTATCCGATTAACTTGTTTCGTGACACAAAAAAAGAAGTAAATTTGCCTGCAACTGTTAAgatattttaagaattaaaaGCATACTTCGGAATCTACTCAGAGCAGTAgcatatatgaatatttttatatattttttttatattcactcAAATGCAGCAGCGCTACAATGCGTCATGTTACGGATCGGTCCAAAAGAGAGACCGGACCGGCAGTAACCTCACCAACACGCAGAACAATTGTTTCTGGGCCGTAAAGTAACATTTGTGCAAGCCTCGGACAGGTTCCTCTCCCGTGTTGGTATTTACGGAAATCCTGAGAAACGCAGAGGCGGATGTAAAGTAGGAGGCTGTCTGAGAAACCTCACTGTGCTCCGGCACCAAACCACTCTCCTGCACCTACAGTGAGGAGCTGCGgctaaattattttgtgtgtgtgcaggtcgTTTCTGGAGGTAGAAACAACTTTAGTTTTCCTAAATTATTGCTTACAGTAGAGTAATTAGGGTTTTACCCTCTGTGTTGTCAGTTCATTGTTCTTCCAAAGATATGTGaggatttattgttttttttttctttatattttcctcaagtatatattttaaagtgttgttgAGCGCAGACAATGAGCTGAAACAGATGATGGGCAAGCCTGGGTTCTTACCTGGCCACCTCGagtgtttaatttatatgtgtTGCTGCTatgctgaagaaaaacaaaatcatttttaaagctttgtgCAGCTCATGACAACTGAAACCATAATCCTTTGAAATATGCCTTACTTAAATTGCaaagtaattataaaatgtgtatttgtgatTGCACTTGCTCTGTCCAAGGACTAGTTTTGTATCCTCTGGCTCTTTGCTGTTGGAATTCTGCACACTGGATTAGCAATGGGCTACAGTTTGTTTTCCCCCATGTTGCTGGTGGTCATTTTAAGTTTCAGCCAATCCTACTCCTATAAATAAGtggttacattaaaaatgtgtagtAATAGTTAGACACGGGCCATTGCAGCACAGCATCAATCTCTGGAGGAGAGGAAATGAGGGGCTGTGGCTGTTCTAGGGTTGTGTGGAATGGTGGGATAAGATCTAAATATGCCCCTACAATCCATACAGAATTATTCACATTACCTGAACATGTATTActggtatttaaatgtaaagggaTGCGTTGTGGGTGGGGTGTTGGGTGGTCCGTGGGCCAAACAAAAGTAAGAGAAACCCTGCTTTAGATGTTTAGTTAGGATGTCTTTTGGGAGTCCAGGAACTATGCATTATGATGCCAAGAGTTCAAATTCAGGAGTAGATAAAATTGATTACCTTTAATTTGCCCTTGTTTGAGAAGTCCTCATTCACCAAAGTAGGAATTTAAGTCACCtatgaatgtaaaatgattTTACCATGTATTAATCATGTTGCAAAAGCCAGAAATAATGTTCCTACAATTTGGCACGATTTCCTCTCCCGCATCACAATCGTAAACCCTCAGATGATCTGGTTTACGCCCCCCGGTCAGGTCACAGTGTAACCGCTGTGGGTCAGTGAGGCAGGCTGACGGGCCCATTTCTAACAGTGGTGGCAGAATTTCAAGTCTTAATGACGGGTGGACCAGGCTGTCCCAGGCACAATCATGGGACATTTGAGGTCAATGTCTGCTTGAACCTGAAGTTTTGGTTTGTAAGTgaagcactgtatttttgatttttgcTTTCCCCCCCGAAGAGTTCCTGTCCCAAGATTTGTACTGAATGAAATCCACAAATGTACACCAATGATACTGATGCTTACCGAGTATTAACAGTGCATTTTGCTCCTGGTCATCAATACTAATGGTCTCTCGAAGACAACCgaattaacataatttatatatatataaataaataaaataaaaagggtaaCCGATAGTCAAATTGTTCTGGCTGTTAGTACAATAGAAgttaatcaaataaacaatatcacATGTTGTATTTGATCTCTTTGACGGGTGAGTTGTATGGTGCCTTGTGTACAAAAAcagcatttctttgtttttttgcacccacatttaaaaatgaccggaacattaaaatgtaaaaagtttcTACATGTATGATTACATCCCTGGACTCCTTTGCATAGTATTTTTTCTAGGATGTAGATTAAAACGACTTACAAATGTCCTAATACCTGCTGAACTACACCAGTGGCAG

Function

GO: NA

KEGG:

id description
K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154664 lncRNA downstream 24732 15481144 ~ 15483716 (-) True G123346
TU154473 lncRNA downstream 815449 14691970 ~ 14692999 (-) True G123204
TU154437 lncRNA downstream 913906 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 919690 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 941381 14566247 ~ 14567067 (-) True G123177
TU154710 lncRNA upstream 153443 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 188921 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 256593 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 590270 16124282 ~ 16127405 (-) True G123452
TU154833 lncRNA upstream 946017 16480029 ~ 16480293 (-) True G123488
AMCG00002455 mRNA downstream 145880 15338087 ~ 15362568 (-) True AMCG00002455
AMCG00002454 mRNA downstream 396582 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002453 mRNA downstream 503104 14976106 ~ 15005344 (-) True AMCG00002453
AMCG00002452 mRNA downstream 587943 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002446 mRNA downstream 658674 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002463 mRNA upstream 73029 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002464 mRNA upstream 92186 15626198 ~ 15630089 (-) True AMCG00002464
AMCG00002470 mRNA upstream 289217 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002472 mRNA upstream 304867 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002473 mRNA upstream 408094 15942106 ~ 15950022 (-) True AMCG00002473
TU154543 other downstream 562137 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 1854212 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 2479042 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 2479042 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 3502097 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 1302144 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 2388440 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 7551982 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7647909 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8727553 24261565 ~ 24261823 (-) True G124829

Expression Profile