RNA id: AMCG00002470


Basic Information

Item Value
RNA id AMCG00002470
length 1941
RNA type mRNA
GC content 0.49
exon number 19
gene id AMCG00002470
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15823229 ~ 15837658 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGTAAAAACAAGAAGGCAGAACTGCAGGGAACAGCATGCCCAGGCGAGCCCAGCCGACAGAGAGAGAAGTTCGCGTGTGTCGCCGGCGCACGGCGGCAGCGGCGGCGGGGGTAAAGCTCCGGGCAGACGGCCGGGGAGGGAAGCCAAGCCCGCCTCCTGCAACAGCGCACAACTACACAAAAACAGACTGCTTTCCGTCCCCGCTAGCATCAGACATCATCTGGGCCTGAGTCTGCCCGCTTGCATAAGGATAGGCATCACCCTGGCTTTGGCTGCTGTGGCTGGCATTTTACACTGGTACCATGTTTCAAATCTCTTTGAGAATGATCGCCATTTTTCACATCTTTCTACCTTGGAAAAGGAGATGGCTTTCCGTACAGAAATGGGTCTTTACTATTCCTACTTCAAGACTATTATTGAAGCGCCTTCCTTCCTAAACGGTCTCTCTTCGATAATGAACGACAGACTCACAGAGTATCCTCTTGTTATAAACACCCTGAAGAGGTTCAATCTATACCCAGAGGTGGTCCTGGCCAGCTGGTACAGGGTTTACACCAGTACAATGGATTTCTTTGGCATTGCGACTAAGATGTGCTGGTCTGTCAACAGGGGAGAAGGACTGAATCCTGTTGAAAGTTGTGAAGGCCTTGGAGATCCTGCTTACTTTtatgttacatttgtttttatactgaATGGGATAATGCTcagcttgtttttcctttatggGACCTATTTAAGTGGAAGTAGACTTGGTGGTATTGTCACAGtcctgtgtttcttttttaatcatgGAGAGAGTACGCGGGTCATGTGGACGCCTCCTCTGCGCGAGAGCTTCTCCTACCCATTCCTggtcctgcagctgctgcttctTACTCACATCCTCAGGTTTTGCCCAGTTCGTattgCATCCTTATTTGCATCTTACATCATGGGGTATCTGGCTGCTGCCAAGCTGCAGACACTCTTACTTACCCAcatgATTTCACTTTTGGCTTGTTTCGTTTTAATGTTCGGAAATGCCATGCTTTTGACGTCTTTCTATGCCTCTTCGCTGGTATCAATTTGGGCCCACATAAGCAGTTTGATCAAAtccaagtttaccagctacaagGATTTTGATACCATGATGTACACCTGTGCAGCGGAGTTTGACTTCATTGAGAAGGAGACTCCTCTGCGTTACATGAAAACACTGCTGCTCCCAGTAAATCTTCTCATCTTTGCTGCGATTGCTTCAAGTCTGGTTTACCACATTTTGCAGCTAATTGCATTCACGGTACTAGCGGTCCTAATTATGAGATTAAAGCTTTTCCTCACGCCTCACATGTGCATAATGGCCTCGTTAATCTGCTCGAGACAGCTCTTTGGCTGGATAAAGCAGAAATACAAGCAGCAGCTTCTGGTCTTTGGGATCCTCTCCCTCATGGCCATTCAAGGGTTGGCCAATGTGCAAAACCAGTGGAGCATCATGGGAGAGTTCAGTAACCTGCCGCAGGAGGAGGTGATCGAGTGGATCAAGGAGAACACCAGGCCTGATGCTGTATTTGCTGGAGCCATGCCCACAATGGCCAGTGTCAAGTTATCCGCCAACAGGCCTATTGTAAACCATCCGCATTATGAAGACGCCGGGCTCAGGGAAAGGACAAAACTGGTGTATGCCATGTACAGCCGCAAACCAGCAGAACAGGTGAAGTCTAATTTAGTCCGGCTCGGAGTGGACTACTTTATACTGGAAGACTCGTGGTGCACAAGGCGGTCCAGgccTGGCTGTAGCATGCCTGAGATCTGGGATGTTGAGGACCCCGAGCATGCTGGGAAAATTCCTCTCTGCACCATACTGGGCAGGGATTCCAGGCCTCACTTTACCACCCTGttccaaaataacatttataaagtCCTCAAGGTTTCCAAAACTGCCAAAGATAGGCTTTAG

Function

GO: NA

KEGG:

id description
K24553 DPY19L; C-mannosyltransferase DPY19L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154733 lncRNA downstream 28057 15790605 ~ 15795172 (-) True G123405
TU154729 lncRNA downstream 100092 15722933 ~ 15723137 (-) True G123401
TU154710 lncRNA downstream 133888 15687455 ~ 15689341 (-) True G123385
TU154664 lncRNA downstream 339513 15481144 ~ 15483716 (-) True G123346
TU154473 lncRNA downstream 1130230 14691970 ~ 14692999 (-) True G123204
TU154794 lncRNA upstream 286624 16124282 ~ 16127405 (-) True G123452
TU154833 lncRNA upstream 642371 16480029 ~ 16480293 (-) True G123488
TU154834 lncRNA upstream 643910 16481568 ~ 16483051 (-) True G123489
TU154874 lncRNA upstream 810749 16648407 ~ 16651454 (-) True G123524
TU154878 lncRNA upstream 815841 16653499 ~ 16654863 (-) True G123527
AMCG00002464 mRNA downstream 193140 15626198 ~ 15630089 (-) True AMCG00002464
AMCG00002463 mRNA downstream 206964 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002460 mRNA downstream 289217 15508448 ~ 15534012 (-) True AMCG00002460
AMCG00002455 mRNA downstream 460661 15338087 ~ 15362568 (-) True AMCG00002455
AMCG00002454 mRNA downstream 711363 15060847 ~ 15111866 (-) True AMCG00002454
AMCG00002472 mRNA upstream 1221 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002473 mRNA upstream 104448 15942106 ~ 15950022 (-) True AMCG00002473
AMCG00002474 mRNA upstream 113575 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002475 mRNA upstream 200743 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002477 mRNA upstream 291782 16129440 ~ 16154565 (-) True AMCG00002477
TU154543 other downstream 876918 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2168993 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 2793823 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 2793823 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 3816878 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 998498 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 2084794 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 7248336 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7344263 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8423907 24261565 ~ 24261823 (-) True G124829

Expression Profile