RNA id: AMCG00002473


Basic Information

Item Value
RNA id AMCG00002473
length 2155
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00002473
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15942106 ~ 15950022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCTGTGACACCCGACTCCATCTTAGACGACAACAAGAGTGAGGGAGAGCTGGCTTTCACTGCAATTCAGCGGACATAACATGGACATAACCCCGCTATAGTGAACCCGGGCGTGTCATGTGAACGCCACCCGGTCGCACAGGAGACCGTGTTCCTCCTCTCGAGAAGATCGGTGTCATTATTATGAAACATGGACCGTGGTGCAGTTGACAGTCCAGTGACCTTAGTCATCAAGGCCCCTAACCAAAAATACGATGACCAGACTATAAACTGTTTTTTGAACTGGACTGTGGAAAAACTCAAATCTCACCTTTCAAACGTGTATCCAAGCAAACCGtcTTCAAAGGATCAAAGGCTAGTGTATTCTGGAAGGCTGCTGCCAGACCACCTGCAGTTGAGGGATGTCCTCAGAAAGCAAGACGAGTATCACATGGTTCACTTGGTGTGTGCCTCCCGGAGCCCCCCTGGATCTCCACAACCCAGTAACAGCAGCCTAGACACGCCAGCCTCTCCCAACTCTTCACGTTCAGCCAGCTCAGGAGCCTCTTCCCCAGCTACCGCCCCCAGCCCAGAGTCCCTGGCAGCCTCCACAAGTGCGAGCTCTGAGGGGCTGCGGCATCGTGGCAGTGCCctgcagccccccagccccGACCAAAGCCATGCAGCTCCCAATTTTATGCAAGGaCCCCTGGGAAACCAGCTCCCTGTTCAGCACGGCCTACCTGCAGGTTTCCCCATGTATCCCATGTACAACCCCGTGCAGGTCCTGTGGTGGCAGCAGATGTATGCCCGGCATTACTACATGCAGTATCGCGCGGCCGCAGCCTCCTCTCAGGGACCCAGTCCCGTGCTGCCAGCAGTACCTAGCGTCTCCCAGTCGGCCGAGGCGCCCCCGCAGAACGAGCCACCTGTGGTTCCCAACCCCGCTGTGCCCGAGGACCGGCCTGCCAACCAGAACATCCAGATGAATGCCCAGGGTGGGGCCGTCATCAACGAGGACGACCTGAACCGCGACTGGCTGGACTGGATCTACACCTTCTCACGCGCCGCCATCCTGCTCAGCATCGTGTACTTCTACTCCTCCTTCAGCCGCTTCGTCATGGTCATGGGCGCCATGCTGCTAGTCTACCTACATCAAGCTGGCTGGTTTCCTTTCCGCGCGGACCTCCAGAACCCGGGAGAAGAAGGCAACCCACAGGAACAGGAGGCGGAACACAACCCAGACATTCAGGAAATGGAGCGCATCATGGACGAGGGGCTGGACGAGGACGCGGGAGACAGCGGCGACGACGCACCCGAGGACCATGGCACGGCCCCCCACCCCAGCTTCCTGTCCTCCGCCCGGTCCTTCATCACCACCTTCTTCACCTCGCTCATCCCCGAGGGTCCCCCCCATGCCGCCAACTAGACTCCGTACCACCGCGCCGCTCCGCCACTGTACATAACGCTTCATTAAAACCCAGACTGATGAAACTGAGGCGTGGTCGTGTGGATTGTCAACACAAACAGGGCCGCTACTCCTATCTGtgaaggactttttttttttttttaaatatgaggGGGGCGTCCCAGCAACTGAGAAATCCTTGTAACTTGTCTTCcatttggaaatgtaaaaagGCAGTCATCCATTTTTCTTCTAGAGGGAAGGCCGAGGGTGGGGGTGGCGGGGAATCATGTGcggttaacaaaataaaacccctGCCCATtccaatatatatgtatactgatAGATTTTCTCTTGGAGGAGAGAAGCACTTTGAATAAATTTGAGATTCCCTTTTTATACAAGGTGTGAGCAGTTTATTAACAGAGATGAAGAAGTCTTCTCAGTTCATCATCTTCGAGTGCTGCAGTGGACGTTGATGTCTGTGGCGGGCCTTGATCACATGTTTTGTAAGCTACAGTGAGCacatttgtaaatacacatgGTTCATGAAGAGAGAGCCAGGTCCTGCCGGGTACTGGGCAAGCGTTGCAACGCCAGACTTCCATGCCACCTGGGGAGATAACATTGCCTATATAAAACTGGATCATGCCTACAGAGCCACATTTAAATAGCCtttatcttttttaatctttatacGTGCAATTGAATTGATTGGAGCTATTGGCAGTCAGTGGTttctttttaagtgtttttttttttttttt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154733 lncRNA downstream 146934 15790605 ~ 15795172 (-) True G123405
TU154729 lncRNA downstream 218969 15722933 ~ 15723137 (-) True G123401
TU154710 lncRNA downstream 252765 15687455 ~ 15689341 (-) True G123385
TU154664 lncRNA downstream 458390 15481144 ~ 15483716 (-) True G123346
TU154473 lncRNA downstream 1249107 14691970 ~ 14692999 (-) True G123204
TU154794 lncRNA upstream 174260 16124282 ~ 16127405 (-) True G123452
TU154833 lncRNA upstream 530007 16480029 ~ 16480293 (-) True G123488
TU154834 lncRNA upstream 531546 16481568 ~ 16483051 (-) True G123489
TU154874 lncRNA upstream 698385 16648407 ~ 16651454 (-) True G123524
TU154878 lncRNA upstream 703477 16653499 ~ 16654863 (-) True G123527
AMCG00002472 mRNA downstream 18979 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002470 mRNA downstream 104448 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002464 mRNA downstream 312017 15626198 ~ 15630089 (-) True AMCG00002464
AMCG00002463 mRNA downstream 325841 15607041 ~ 15616265 (-) True AMCG00002463
AMCG00002460 mRNA downstream 408094 15508448 ~ 15534012 (-) True AMCG00002460
AMCG00002474 mRNA upstream 1211 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002475 mRNA upstream 88379 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002477 mRNA upstream 179418 16129440 ~ 16154565 (-) True AMCG00002477
AMCG00002481 mRNA upstream 618314 16568336 ~ 16582900 (-) True AMCG00002481
AMCG00002487 mRNA upstream 708876 16658898 ~ 16672579 (-) True AMCG00002487
TU154543 other downstream 995795 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2287870 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 2912700 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 2912700 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 3935755 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 886134 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 1972430 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 7135972 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7231899 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8311543 24261565 ~ 24261823 (-) True G124829

Expression Profile