RNA id: AMCG00002477


Basic Information

Item Value
RNA id AMCG00002477
length 4338
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00002477
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16129440 ~ 16154565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTCATATGAGTGTGCTTTGGAGGAAGCCATGAAACTTCAGCCTCTTAAGTGTGAAGACAGACTCGAGATGTGCCACTTTAAAGTTCTGGAAAGTATCATGGAGTGTCTGGCGGTAGACGATGACATTTGCATCCTCAAGCATGAGACGGCTGACAGCGTGCTGCAGCAATCGCAGGAGAGCCCTGTTTCAGTCAGTTCAGGGGATGAGTCCGTCGCCTCTCACTTTGCACTTGTCACCGCTTATGAAGACATCAAAAAACGACTGAAGGAGGCTGAGAAAGAAAACTTGTTTTTGAGGAAGAGAGTCAAGCAACTGGAAGATAAGttAATTAAGCCAGATGAAATATCCTCAGATGGACCCAAGTATGTAAATAAAGCATTCAGCGCCTATCGTGGAATCTACATAGAAAAGAATGACCTTCAGCTGGAGCTGGATAAAGTGaaaaaagagaagacTGAGTCTGAAAAACTCTTGACTGAACAACTGCAAGCCAAGGAGTTGGAGGTTCTGCAGCTCAGAACCGAGTTGGAAACAAGCCAAGTGATGAAATCCATGAACCAATCCCAGGATTTTTGGGATGTTTATAAAGTGAACCACGAACTGAAGATACACACTCTACAGCAGCAACTAGATATAATAAAGGTGCAATATAGCAGACTGCAAGAAAAATGCAAGGCAAGACCTATTGaattcttaGACCAGCCTGGAAATGATCTGTCCAACACTGAAGAGAAGCAGGAATGTCGggATGTTGCTCTGCTGAAGACATACACGGACCTGAGAAGAGAGATGTCTAATTTATATGCAGTGACTAAGTTGCAAGCCGAGATGGTGAGAAAACTGAGAGACAACTCGCAAGGTGCAGCCAGCAGAGTCTCTGCCACAGTTCCAGTCCAGTGCTTAGAAGACGTTGAAAAAGTGAAACGGACAGTGCCCTCGTTCCCTTATCCGAGCTCCCACAGCTACTCTGAAAGCCCCGCGCTGGGCTTCCCCACAGCCGCCGCCTTGAGCGACGAGGCCGGACTCCGGACCAGCCCCAGGCCGGCTCCCGTGGGCAGCTCGGCCGAGCAGCACCACGGCTCCTACGGGAAGAGCTCATTGGACGAGAACTCCTGGTCCTTCCCGAATTGTCCCAAACCAAGCACCGCCCAGTTCTGGGAAAGCACACGCAACTCCCCCAACCCGAGCGCTCCGAAGAACCCCAACACGGACTGGGTCAGACCGTACTGATgttgattttgaattttaatgatTAGTTGGAAGTGATGTAACTGTTGTAAAGGGATGCAGCTGTGTGCTACCTCTCGGTTCAATCTGCCTTAACAAGACGTCCTACACGAGGAACTTCCACAGAGGGGATCATTGGGGTTTCTGTTCAGTTATGAAGGACATGTCCGCTCCTCCGTCAAGAAGGCTCCAGAAAACCTCCATAATAAAGACTATTACTTGACAGAAAGGCTGCTCTGAAGTGAAGATGGGCTAGACTCTGTAAGACTGAGGAGGGCCGCTGATGGGAGGATTTGAGCTGAACCCAAATACACGACTTTTTTCTACTATGAGGCAGAAACCAGCACTAGTCTAGGCACTGGTATGAGAATGAGTGCTGTTCTCATCCTTCAATAAGGAGGAATACCACTAAATTAGTATTCAAGCTGCTGTatctattcattttaatcacaaaatCATTGCTAAATGGTTGTAATATAATTCTTCccatacatatatgtacatatggAGTTTCCATGATGGTTAAGTGAAgcatttgatttagttttttagtgTTGTTAATTGGGCTGCCCTGGGCCAGTTCTGGCTAAAAAGAGTCCCAAATTGATTCCCAAACCTTTCCATAACCAGTCTGCTCCCAAGTCTTTCATCCACTTAAAGCCTGAACGCAGAGCTGAGCATGGGTTATATagcctggtgttttttttattattttatttcttccataCATGCATCTGCTGTGCTTCCTTTGGGTGACTCTGTGCTAGAGTGCATAGTATCATGTAATCTTCATTTAGTCACCCttgataaaatgtaatcatatgCTGTGACTTCATACATGTCATCTGCTGTGCAATATTACAGTGGCATTGCTTCAGTAGTGTGCTTCTTTTCACCTGGAACAAGATGGCTTTTCTCGTTAGCCCGTGTTTAGCCAACACCCCATATTAAAGACGTGTCCATTGTCTGCAGAAACCGTTTACCTTATTGGCCACCCCAGAGGTCTCAGATAAACTGACATGATAGTCAGTAATAATGAAATTGTGCTTTTTAGTTTGTGTACATGTTTTATGggtgttgttgattttattttttggggggaaacaTATCCAAGAGAGTCCAATAATATAGCAAAGAATACCTATATAAGTGTCTGGTTTTAATCAGTTTAATGTAACAGTCACTGCAGGCttagtaattaaaatgtgtgtgcacACCGTTCCAACATCAGGGTACACACTTTAATTCAAATTCTATTTTATGAATCTAAGGTGGTGTTGAATTCAAACTCTAGACCACTTTAATCACAATAGTTACCAAGAGTCACTGATGTGCATTGACAACAAAAGGCCTGGTCAACCATTTGTTCCCCCAAAGGAAAGTTTTTGATCTGTCCCTGCAgttgttttgtaataaaatcaagACCTTGTGCACAATAACACCATTAACCTTGTATATCAAAGCTATGCAATATCAGGATGTGTTATATGTAGGGCCCTGTGTTTGGACTTGGCTTTTTAAACCGCAATTCAGTCATGCAATATACAGGGTCCTATTTATGCATACAGCACATTTTACAGtccatattattattcataactCTGTTTCCACcatacacaagaaaataaaatcttgtgTTTGATGTAtaaaagtacaattattttttgccACAAATGTCATTGTGCATAAAGGGCTTCATAAATGaattcacttttcttttatagccagttaaattatttgtatctaatcttgaaggagccttattttaatgttctgtgtgttgtgtgtcatgATTTAAGGCAGTTCATAAAATGCTGTATTGTACTGCACAGAGATTCAAGCCAAAAGTGAAGatacagattgtattttttgtgtttctctgtaagAGAAAGTCTACCTGTAAATACCCATGGATAGCAAATACATGACTGTGAAGTTCGGCATCAAtgggaaaaatactttttttttataatcatgtGAATGACGTTGGTAATTCTATACAGTAATGCTGATAAAAAATCTTGAACATGTGAAGAAGCTTATAGAGTTAACgtcataattgtttttaatatcacaGGATCTTTTTTAAGAAGCTGAAGCTttgaagaatacatttcaatagtTTATATGCTTTAGATGTTTAGCTTAGATATTATtccatcttttaaaaacaactgtcGACATCTTCATCATCAATAAAGAACCGGAGACCTCAAAACCCCCACAACTGAGCCAGAGCTACTCTAAGAgaatttattttccaagaaaCCCCCCCCATTGAAATGGAGAACGTGGcttttcaagtttgttttattcagcagCACATCTAAATAAGCCTGCCACCTGCCACCGAACAAACTACAGTTTTGTATCCCTCTGTCATCTCGCGCACATACTTGGGCTCGCCTGTGATTAATGGAAAAAGTATTACATGTTGGAATTTATCGTGGCCAATGAACACAGGCAGCTCAAGGGACTGCAATCTCCAGCCACAGTAATAGAAGAAAATCCCATCTGCATAAAGCATCTGCAAAGCAGCGAGGCTTTGAATCTGAGCACCAACTACCTGTGTAATAATGTGGTGCAAACAATTTCTCATTCGGCTGCAGGATCTATATTCAATTTCGCTCCAGGCaactttttctccccctccaaACTGCAgtagtttttctttgttctatGAAAACATACTGTGTATAGAGTTAAGAAAGGATGAAGGTCTTACTATGACATCTGTACCATGGAAATATATGACCCCCTGCTTTAGCTATTTAAATGAGTGTAGCGAAGTCACAAAGCTAATTACTTTCTTGTTAAGATCCACTACAGCAAACCGAAATCAGAAACATGTTCGTCGCCCATGAAGGCATGACTCAGCAGGTGGGCAACGGCACTGCCGAAATGTAGGAATGTGCCCGAACCAGGACTGGTGGCGGAGTGGGAGTGCAGAGAAGAGGACCACGGCAGATATTTTTGTTTCGAGACACAGCATGTCTCCgtgtattgtttcaaataacGAGGACACCCAATCACCTAATCCCTTTGTGATAACAGCTGAAGCACAGCGGGCGACCGACACAATGTGTTCCATTGGGTAGTCTTTCC

Function

GO: NA

KEGG:

id description
K12651 AZI2; 5-azacytidine-induced protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154794 lncRNA downstream 2035 16124282 ~ 16127405 (-) True G123452
TU154733 lncRNA downstream 334268 15790605 ~ 15795172 (-) True G123405
TU154729 lncRNA downstream 406303 15722933 ~ 15723137 (-) True G123401
TU154710 lncRNA downstream 440099 15687455 ~ 15689341 (-) True G123385
TU154664 lncRNA downstream 645724 15481144 ~ 15483716 (-) True G123346
TU154833 lncRNA upstream 325464 16480029 ~ 16480293 (-) True G123488
TU154834 lncRNA upstream 327003 16481568 ~ 16483051 (-) True G123489
TU154874 lncRNA upstream 493842 16648407 ~ 16651454 (-) True G123524
TU154878 lncRNA upstream 498934 16653499 ~ 16654863 (-) True G123527
TU154999 lncRNA upstream 803597 16958162 ~ 16960107 (-) False AMCG00002503
AMCG00002475 mRNA downstream 84350 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002474 mRNA downstream 140405 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002473 mRNA downstream 179418 15942106 ~ 15950022 (-) True AMCG00002473
AMCG00002472 mRNA downstream 206313 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002470 mRNA downstream 291782 15823229 ~ 15837658 (-) True AMCG00002470
AMCG00002481 mRNA upstream 413771 16568336 ~ 16582900 (-) True AMCG00002481
AMCG00002487 mRNA upstream 504333 16658898 ~ 16672579 (-) True AMCG00002487
AMCG00002488 mRNA upstream 535271 16689836 ~ 16734523 (-) True AMCG00002488
AMCG00002486 mRNA upstream 597983 16752548 ~ 16753496 (-) True AMCG00002486
AMCG00002491 mRNA upstream 637991 16792556 ~ 16813272 (-) True AMCG00002491
TU154543 other downstream 1183129 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2475204 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3100034 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 3100034 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 4123089 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 681591 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 1767887 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6931429 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 7027356 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 8107000 24261565 ~ 24261823 (-) True G124829

Expression Profile