RNA id: AMCG00002480


Basic Information

Item Value
RNA id AMCG00002480
length 1881
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00002480
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16535647 ~ 16570427 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCGGCTGGGCTTTTCCGTGTTGTGGTGGACGGTGACTCTGTGCGGCAGCGGCGTCTTCCCTGCCCGGGCGGggGGGGCTGTGAACACGTTCAAGATGTCTAGACTGTGCAAGTTTTGTGATGTGGAACCGTCAATATGTGACAACACCAGCGAATGCCAAACCAACTGCTCCAGAACGGCGATATGTGAGAAGGTGGATGAAGTCTGTGTGACCATTTGGAGGAAGAATGATGAAAACATAACCACTGAGACGTTGTGTCACGACCCGGCGAAGGAATTATATGGCTTTCTGCTGGATGACTACAATTCCACACGCTGCTATATGAAAGAAAGGAAGGCTCCGGGGACACAGTTTTATATCTGCTCTTCGATGACGATGGAGAAGAATCCGAAACAAGAGACTCAAGTGTTGCCAGTCATCCTGATCAGTCTCCTGCCGCTGCTGGTCTTGGCCATTCTGGTGATCACTGTGTTCTACTGGTATCGCATATACCAGCAGAGGAAGCTGAACGAGGAGTGGGCGAGCAAGAAGCCCAAGCAGCGCAAGATGGGCCATCGCGACTGCAGCGACGCCTGCGCCATCATGATTGATGACGACGGCTCCGACAGCAGCTCCACCCACGCCAACAACCTCAACCACAACACCGAGCTGCTGCCCATCGAGCTGGACATGCAGGTGGGCAAGGGGCGCTTCGCTGAGGTGTATAAGGCCAAGCTGAAGCAGAATGCCTCGGAGCAGTTCGAGACCGTGGCCGTCAAGATCTTCCCCGATGAGGAATATGCCTCCTGGAAGAACGAGAAGGACATCTTCTCCGACATCAACCTGAAGCACGAGAACGTCCTGCACTTCCTCACTGCCGAGGAACGTAAAGTGGAGAAGCAGTACTGGCTCATCACAGCCTACCACCCCAAGGGAAACCTACAGGAGTATCTCACCAGGCACATCATCAGTTGGGAGGACCTCTGGCTCCTGGGGGGCTCTCTGGCTCGGGGAGTGGCCCACCTGCACAGTGATCACACCCCCTGTGGTCGCCCCAAGGTGCCAATTGTGCACCGGGATCTGAAGAGCTCCAACATCCTGGTGAAGAATGATCTCACCTGCTGCCTTTGTGACTTCGGCCTAGGCCTCAGGCTTGACCCCTCACTATCTGTGGATGACCTAGCCAACAGTGGACAGGTTGGGACCGCCAGATACATGGCACCTGAAGTTCTGGAATCcagaattaatttagaaaacataGAGTCTTTTAAGCAGACAGATGTGTACTCCATGGCCCTGGTGCTGTGGGAAGTCACCTCACGCTGTAACGCCATTGGTGagGTGAAAGACTACGAGCCCCCGTTCGGCTCCAAAGTGCGGGAGCACCCCTGTGTAGAGAGCATGAAGGACAATGTCCTCCGAGACAGAGGCCGTCCAGAGATCCCCAACAGCTGGATGAACCATCAGTGCTGGGACCACGATCCGGAGGCCCGGCTAACCGCCCAGTGTGTGGCCGAGCGCTTCAGTGAGATGGATCACATGGACAAACTGTCAGGCCGGAGCTGCTCCGAGGAGAAAATCCCAGAGGACTGCTCTGTGAGTGACGGGAACACCAAAGCGTCTACTTGTGGCGGTGATGGCAGCAGTTATTGCTGGAGTGAAGTCGTGTTTCAGAAGAAACTTCCACAGGCCACCATGAGCCGAGTCTCGGCCCAGGGCCTCGATCTCCTGCAGCACAAAGTCTATGTCCTCTCGGCTCACTTGGGGGCTGATGATTATGTGGCGGAAAAAGTTCACGAATCTCCGATGCGGCTGATAGCCCACCATCATCGAGCCTTTCTTCATCATCCTTTCCTTGATGACTGGCGCcacctgttaaaaataaataaatcgtgA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005026 transforming growth factor beta receptor activity, type II molecular_function

KEGG:

id description
K04388 TGFBR2; TGF-beta receptor type-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154813 lncRNA upstream 45695 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 740498 15794408 ~ 15795149 (+) True G123388
TU154711 lncRNA upstream 845684 15689601 ~ 15689963 (+) True G123386
TU154580 lncRNA upstream 1195478 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA upstream 1195478 15337588 ~ 15340169 (+) True G123295
TU154876 lncRNA downstream 81115 16651542 ~ 16651964 (+) True G123525
TU154877 lncRNA downstream 83072 16653499 ~ 16654884 (+) True G123526
TU154926 lncRNA downstream 221673 16792100 ~ 16792799 (+) True G123568
TU155013 lncRNA downstream 410366 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 521548 17091975 ~ 17148336 (+) True G123653
AMCG00002479 mRNA upstream 76436 16343098 ~ 16459211 (+) True AMCG00002479
AMCG00002478 mRNA upstream 198928 16270456 ~ 16336719 (+) True AMCG00002478
AMCG00002476 mRNA upstream 409825 16124380 ~ 16125822 (+) True AMCG00002476
AMCG00002471 mRNA upstream 562500 15970084 ~ 15973147 (+) True AMCG00002471
AMCG00002469 mRNA upstream 601213 15922805 ~ 15934434 (+) True AMCG00002469
AMCG00002482 mRNA downstream 51092 16621519 ~ 16651406 (+) True AMCG00002482
AMCG00002483 mRNA downstream 166257 16736684 ~ 16750596 (+) True AMCG00002483
AMCG00002484 mRNA downstream 183669 16754096 ~ 16769522 (+) True AMCG00002484
AMCG00002485 mRNA downstream 199275 16769702 ~ 16774759 (+) True AMCG00002485
AMCG00002489 mRNA downstream 209401 16779828 ~ 16790437 (+) True AMCG00002489
TU154081 other upstream 3405950 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3473962 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4395182 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 4699478 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 4841482 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 387734 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 1345009 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 2261587 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2559976 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3703662 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile