RNA id: AMCG00002481


Basic Information

Item Value
RNA id AMCG00002481
length 3503
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00002481
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16568336 ~ 16582900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGAGAAAAGCTCATTCAACCGATGTATAGCATCTGCTCATCTCGATGCGAAGATTTGTAACCATGAATTCAATATCCAGtgACAGTAATGGCAGCAGTAGGCCAGTGAAGAAGAATGCTGTATTGGTGGATGGAGTGCATCTGAATGGACCCATCCTGGACTCCAAGGTTGGAGAGAGGTTTGTGCGGGAGGCCCTTCCACTGATCATGGAAGAGGCTGTTTTGAAAGCCACAGACGTCAATGAAAAGgtgtGTGAGTGGCAGTCCCCGGAGCAGCTGAAAGAGAAGCTGGACCTGGAGCTGCGAGACCAGGGAGAGACGCACACCCAGATCTTGGAGAGGTGCCGGGACGTCATCCGGTACAGTGTGAAAACAGGTCACCCCCGCTTCTTCAACCAGTTGTACGCTGGACTGGATCCGTACTCACTGGTGGCTCGCTTAATCACCGAGGCGATTAATCCCAGCGTCTACACGTATGAGGTGTCGCCCACATTTGTACTAATAGAGGAGGCGGTAATAAATAAGATGATCCAGTATGTTGGCTGGCAAGAGGGAGGCGATGGGATCTTCAGCCCAGGAGGCTCTGTTTCTAATATGTACGCGGTCAACGTGGCACGTTACAAGTTCTGTCCAAACATCAAAGAGGAGGGGCTGTCTGGGATGCCGAAGCTGATCCTGTTCACTTCAGAAGAGAGCCACTATTCAGTGAGCAAAGCAGCTGCCTTTCTGGGAATTGGTACCAAGAATGTTTGCACAGTACCTGCGGATGACAGGGGAAAGATGATTCCAGAAGAGCTAGAGAAACTTGTCCAACAGGCCAAGAATGAGGGCAGAGTTCCCTTCATGGTCAGTGCCACCGCCGGGACAACAGTGCTGGGAGCGTTTGACCCCCTGGAGGAAATTGCTGACATCTGTGAAAGACATGGCCTCTGGTTTCATGTTGATGCCTGCTGGGGCGGTGGAGCCTTACTGTCCAGGAAACATCGAGGTCTTCTCACTGGCATCCACAGAGCTAATTCAGTGGCCTGGAACCCCCACAAGATGCTGATGGCCGGCCTGCAGTGCTGTGCGTTTCTAGTCAAAGACCAAACAGGGCTGCTGCAGCGCTGTCACTCTGCGCAGGCTTCATAcctcttccagcaggacaagtTCTATGATATCCGCTATGACACCGGGGACAAGTCCATTCAATGCAGCCGCAAGTCCGATGCCTTCAAGTTCTGGCTGATGTGGAAGGCCATTGGCACCCAGGGGCTGGAGGAGCGGGTGAACAGGGCACTCGCATTGGCCAGGTACTTAACTGAGGAAGTCAAGAAGAGGGAAGGATTTCAGCTCCTTATGGAGCCCGAGTATGCGAATGTTTGCTTTTGGTACATCCCCCCCAGCCTGAGGAACATGCCTGAAGGGCCCGACTTCTGGAAAAGACTACGCGAGgtgGCGCCAGTCATCAAGGAAAGGATGATGAAGAAAGGCTCGATGATGGTGGGCTATCAGCCGCATCGGAGATTCGTGAACTTTTTCCGCCACATAATCATCAGCCCCCAAGTGAGCCGAGAGGACATAGACTTTGTGCTGCAGGAGATCGAGGCCCTGGGCCGAGACCTGTAACAACCACCCAGCACAGACCTGAAGACACTGCTGATCACACCAGCAATGCAGAATGTTTTAAAGACTCTTCAATTgaaaaatgaaccaaaaaacatttaatgttcaCAACCAGCTTTTGGAATTAAACCTTTGAAATTGTTCTGAAAAACCCTCTGATGTCTTAGCAGTTTAAAAAGACAGAAGAGAAAAGGATATATTCAGCTAGCAATACCTATGCAcctctaaaatatttttttttaagcatttaaaggtgtgtatatatttaaatgaaatataattacattcttTGGACCAGCCTGACTTAAAACCGGTTAAAATGAAAACGATTAAGGAATAAGATTACATACAAATTGTGTAGGTTTTGTTTGCCCTTTGAATGGCACTTATTGCCTGTCTTTAATGTCCTAAGCCTACTGTTTAGCTCTTAGTTTAATTGAGACTAAAGAactatttcactttatttacaaCTACAGACATCAATCCCACAGTTATACACCAACACGCTTGCAATGTAATGTAGGTAGGGAGTGAAGCCAGGACTTCTCTTCCCAATGGGTTGGCTGTACAGAAAATAATCTTGAAAGGGACCTCTTAATAGATTTACCATGAGCTTTTcgtgcagtgcagtgcaaatATTACTTTGTCATTAAACGCTACATTACAAATCCGTTATTGTACATATAGGAACAAAACTGCTATTTTTGTAGTTGACCGAAAGCCTGGTGTGCATTACGTTTCTCCTTTTTAGCCTTTATTTTAAGGTTTAATTTAGCTCTGTCTTCTGTAACTTGTTTTGCATACTATAATCACAATAACTCGCATAAATGAGCTTAACCTGAGTGCTGTGCCTTGTCCCTAAAATGTTCTTGCATATGCCATCTTGTAGTATATGAGCTTAGATTGCTCCATAGTTACAGAAACCTAACTAAACTTGACATCATTGTTCTCATTATCATTTTAGACGGGCAAAACTCCTTTCCAATATTCATCAAGTACATGCAAAGATTAGTCTCACTATTAATACTTTCTTCCACAAGTTTAATTACAAGGGAAAGGACAATGTGGTTTacctaatttgttttttgttttcttgtttttactggtgtctgtattttgtgtatcttcttcttttgtgtctctcttttaaatattaaatttattCTGAGATTTAAATTCTGAACAGTTTATAACCAGTGAGGCGTTCCTTTCTTATTTAGCGAAGAGGTGGAGATCAAActctttaaatacaattttcccAAACTGTTGAACATTTGAAACTATAGACTAAACACACTGGTAGCAGTCAAAAGGATAACACAGAAATGTGATCAAATAATAGAACTGTCTGTATGCCAGATTTTTTAACTGCTTGTTTATATAGGATGagggatttattttatatttatttctttaataatatatttatagactGAATACACTTGTTTATCTGGCATCCTAAAGATCATGGCatttgatgatttaaaaaatgggaGTTTATTAGAAACTGAGAGATTATTTCATCTTTTACCATACACTAAATTTCAGACTTATCTTTACAGCAGAAGTGATGACTAATGaattaaagaacagaaaataaacaagggAAGCAGTGCGCAGAAAAGGCAGATTTGTTGATAAAACCACGCAGGGTACTATTTCTGAAAACTGACCTTTTGAAATAGTGATGAAGGAGCTCAGATGGGGAAAATGGgagtggatttattttttgtattcattaaattaactgaatttcCTGTGATCCAAATCCTGTTGTTCAGTGTGTATAGATTTCACAGTAAAAACAGAACTGGCAGTTGTTTCGACCGTTTCGGTTTCTAGTTTAGGAGTTTAAGACATTGCTCGGTCAACTGGTCAGATTTGATTTGTGTGGGGG

Function

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154834 lncRNA downstream 85285 16481568 ~ 16483051 (-) True G123489
TU154833 lncRNA downstream 88043 16480029 ~ 16480293 (-) True G123488
TU154794 lncRNA downstream 440931 16124282 ~ 16127405 (-) True G123452
TU154733 lncRNA downstream 773164 15790605 ~ 15795172 (-) True G123405
TU154729 lncRNA downstream 845199 15722933 ~ 15723137 (-) True G123401
TU154874 lncRNA upstream 65507 16648407 ~ 16651454 (-) True G123524
TU154878 lncRNA upstream 70599 16653499 ~ 16654863 (-) True G123527
TU154999 lncRNA upstream 375262 16958162 ~ 16960107 (-) False AMCG00002503
TU155025 lncRNA upstream 397931 16980831 ~ 16982646 (-) True G123637
TU155030 lncRNA upstream 412229 16995129 ~ 17050056 (-) True G123642
AMCG00002477 mRNA downstream 413771 16129440 ~ 16154565 (-) True AMCG00002477
AMCG00002475 mRNA downstream 523246 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002474 mRNA downstream 579301 15951233 ~ 15989035 (-) True AMCG00002474
AMCG00002473 mRNA downstream 618314 15942106 ~ 15950022 (-) True AMCG00002473
AMCG00002472 mRNA downstream 645209 15838879 ~ 15923127 (-) True AMCG00002472
AMCG00002487 mRNA upstream 75998 16658898 ~ 16672579 (-) True AMCG00002487
AMCG00002488 mRNA upstream 106936 16689836 ~ 16734523 (-) True AMCG00002488
AMCG00002486 mRNA upstream 169648 16752548 ~ 16753496 (-) True AMCG00002486
AMCG00002491 mRNA upstream 209656 16792556 ~ 16813272 (-) True AMCG00002491
AMCG00002490 mRNA upstream 241329 16824229 ~ 16831271 (-) True AMCG00002490
TU154543 other downstream 1622025 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 2914100 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3538930 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 3538930 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 4561985 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 253256 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 1339552 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6503094 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6599021 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7678665 24261565 ~ 24261823 (-) True G124829

Expression Profile