RNA id: AMCG00002484



Basic Information


Item Value
RNA id AMCG00002484
length 4784
RNA type mRNA
GC content 0.49
exon number 31
gene id AMCG00002484
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16754096 ~ 16769522 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAAGATATAGGTTCTGTTTTTGCGgaaactatatatgtatttttaaagacatattttgtttaatactgGTCGCCGTGAAGTCAGTTGGTCATGGGAACTGGCAATAAAGgggATTCTGGGGACATTTCCCTGTCCAGCCAAGAAGGGGATGCTATCAGGGTGTTTGTGAGAGTCCGTCCGCTCACGCAGGGTGGTGGGCTGTCCACAGACGGGGATCCCAACATGTGTCTGACCGTCACCTCGCCCAACACCATCCGATTGCATTCCAAACCTGAGCCCAGGACCTTCACCTACGATCATTCTGACAAGAAGAGTTTCCTTTGCAAGTGCTCCTTTATTGAAATCTACAACGAGCAGATATTTGACCTTTTGGACAGTGCGTCGGCTAGCCTGTTTCTCCGGGAGAACATAAAGAAGGGAGTGTTTGTAGATGGTGCTGTGGAGAAGATTGTGCTGTCGATGGGTTGGAGGAATCGGCGGGTGGCCTCTACATCCATGAACAGGGAGTCCTCACGGTCGCACGCGGTCTTCACCGTCACTCTGGAGTCCAAGGAGACGGTCAACGAGATCGTGAACATCAGGAGCAGCATGCTCAACCTGGTAGACTTGGCTGGCTCAGAGAGGCAGAAGGACACCCACGCGGAGGGGACCAGACTGAAGGAGGCCGGCAGCATCAACCGCTCCCTCAGCTGCCTGGGTCAGGTGATGATGGCCCTGGTGGACATGTCCAATGGGAAGAGCCGACACATCTGCTACAGAGACTCCAAACTCACCTTTCTGCTTCGGGACTCTCTGGGAGGAAATGCCAAAACCTTCATTATCGCCAATGTCCACCCGGGCTCTAAATGCTTCGGGGAGACTCTGTCCACTCTGCATTTTGCTCAGAGAGCAAAGCTGATTAAGAATAAGGCTGTGATCAATGAGGACACGCAGGGCAATGTGATGCAGCTGCAGGCCGAGGTGAAGAAGCTGAAGGAGCAGCTGGCTCAGGCATTGGCCGCCCAGGTTCATGGGGAGGTGCACGGGGACTCTGCACCCGGAGGGCCCAGGGGCCCCTCAGATCCTGTTGAAAATGGTGTTTCACACGGTGAATACAAGAGCCATTTTTTAGAAGCCATGGTGTTCTGGgagaaaagtgaaagtgaaaaaaagACGCTGCTCCAGAAAGTGGCTCAGCTCGAGGACGCGTGGGCCAAGAAAGAGAAGTTCATCCAGTCCAATCGGATGATCCTGAAGTTCCGCGAGGATCACATCTCCCGGCTGGAGAAGACCCTGAGAGAGTCGCATGGGGGGCTGTCGGACCAGGAGAGCGATGCTGTGGTGGCTCAGCTGAAGCAGGAGATCCAGGTGTTAAGGGAACAGGTGGACCAGCACCCGCGTGTGGCGAAGTACGCAATGGAAAACCACAGCCTGCGTCAGGAGAACCAGCAGCTGCGGGCCCTGGAATCGGTGAAGAGAGCCAGAGAGCTGAACGCAGAGGTGGCCGCACAGCTGGAGAAGGCATTCCTGGAGACCACGGCCTCTGAGAAGCCGACTGCAAGTCAGCTAGTTTACTCAACACCTGTGACAGCTGAGAATGTGTCATCAGTGTCGATGGAGAGGCTAAAGGCACAGCTTATGCAGAAACAGACTGAGCTAACCACCACAGTTCAGGCTTATGAAGAATTCAAAGAACTGACTAaACAGAAAATCATGGAGATGGAATCGGAAAAGCGGTACCTTGAAAAAGCCAATCAGCACCTAGAGAATATTTTGGAGGCAACAAAAGCCCACAAACGAGAGGAAGTCTCCCAGCTGAACAAGATGCACGTTGAGACAATCAAGAACCTGACCACTCCCACCAAGGCCTACAACCTGCGCTCTCGCTTGGTGCCACACTTCAGCCCTGACCGCACTCTGGACGGGATCGGGGAGAACCCAGACGAGGAGCAGGTGGACGACATCCTGAACGAGCCCGTGCCTCCGGAGATGACCGAGCTGGCCTGTGAGGCCTTGGCCGAGGAGCTGCACATGGTGCAGGACCAAGCCAGTGCCCTCCAGATCAAGCTGGACGAAGAAGAGGCAAAGACCCGGAAGCTGCAGCAGCAGATCATGCTGAGGAGCGAAGTGCATGACCTAAGGCTGGTGCTGCAGTCGGCCGACAAGGAGCTGGCGGTGCTGAAGGCCGAGTACAGCTCGTACAAGGAAAAACAGGAACTGGAGTTTGGCCAGCTCTCCAGCAGCCTCATCGGTGTGCAGTTGGAGCTGGACAACGAGGCTCACGACAACCTGCAGGAAGTGGTGAAGTTTGAGTCGGAGGAGAACGAGCGACACCTGGCTGAGAGCAAGAGGGAGATCACCGCCCTTCAGGCTGAGCTGAGTaaattgATGGACTCCCTGAAAGTAGAAAAGGAATACAACAGCAATTTAGCATCCCAGCTGGAAGAAGACAAAGAGACCACTTCCAAggAGCTGTTGAAAGCCCTGGATGAGAATATCCACTTGAAGAAGCAGGTTTCTGATTTGAGTTTGCAGTGTGAGCAACAGATGATAAACCTGCACAATGTGGAGAAAAGTCTGGCTGCTGCACAAGCTGCAATTGCTGACCTGGAAAGCAAGAATGCCTCTGACAAAGAGTTTGTGGTGGATATTATGAACCAGATCCAGGAGTTAAGAAGCGTGCTGAGTGAGAAAAACGAGATTCTGTCTGCGCAGACCAGTGAGCTGGAGGACATTAAGGCCAAGTACTCCGCAACTTTGCTAGCCAAGGAGGAGAGCAAGATGATCATCCAGAGGTATGAGAAGGAGACGGTTGAACTCAGGGAGTCGATGGAGAGGAAAGTGGCCTCCGACCTCATTGAGCAAGAGCTGTTGCAAGAGGACCTGTCGCATGCAGCGGAGGAGGTGGAGAGGCTGACGAAAGTGTTCAATGAACAGGCGGCTCTCCTCCAGGCTGCACAGGCAGAGGCCACGGAGAAACAAGCCACCATCCGAGAGCTGCAGGATCAGCTGAAACGGACAGAGGAGCAACTGGCATTTaagaatgaaaatgaactgaATCCCAACGAGCTGGAGCAGGTGACCCCCATCACCCCACCATGTCACTCACAGACCCCCAAGACACCCTGTAGTTTCAATACGGACTTGAGGAAGGTGCTGGATACTCAGGAGAGAGAGCTGGTGAACCGGCGCTCATCCATGGTCACTCTAGAGGTGTTGGTAAAAGAGATGAATGCTGAGAGAATGGCTAAGAATGAGGAAATTCTGCGTCTCAAGGGACAGTTGTGTGAAAAGGAAAACTTGCGTCTGGAAATGCAGACTCTTGTGGACAAGTGCTACACCCTGCAGAAACAACAGGGCCACCATACTAACGGTGAAGACAAGCTTGATCGTGAAGCTCTCATGAGAGAACTGAAGGAGGAGAGAAAAGCAAGGGTTACCTCAATGAAGAAGCTTTCTGAACTGGAAGAGCAGTTGCGCAATACTTCGACCACCCTGTCTAAAGCGGAGATCTGCATTCAGGAGATGACAAACGAACTGAGGAATCGGTCGATTGAACTGAAAGAACTGAGGGAGAAAGATTTGGAGCAGGAAAAACATGCCAAGGAAGTGGATGTTCTGAGGAAACAAGTGGAATTCCTGGCTGAAGAGAATGGAAAACTAGTGGGACATCAAAACCTCAACCAAAAAATCCAGTACCTGGTGaagcttaaaaaagaaaacaccaaacTGATTGAGgacaATGAAAAACTCCGCCTGGAAGTCTACAACttgaaagaaaatggcaaaaaaaaatctgacagcCTCTCCAGTGAGCCCATGGGTTTGAATTAATCTCTCAGACAGCAGGTGCATGAGTCACACATCTCGTATGAAACACGGTTACCCACATGCTTCCAACGCTgtgatctgtttttttaatatttgaccTAATTGGAAATCAAACCCTGGTTCACATGATCCAgctcttttccttcttctctcaGGGGAAATAAGTAATTGTCTTGTACTTTTACTGTGTTCATAGCTATtacctgtgatttttttttaatgcagattttctttattacatttaattaaaatctgaacaATGGTGCTCAGGCCTCTGAAAAcctaaaaaatactttaaatctgtgaaaaagcATATATCTGAATATATACACATGGCGTCTTTTAAATGAGATCTATGACTGTAATGTGAGGACTGATCACTAGCATTTGccaagaaaaaaggaaaactaatgTAGTGGAGGTTTGTTTTCATAGTCCTCTACAGTACTGAAATTCTCACAGACATGTCtgatatgcatttatattgcCCACTGAAATTGTGGTGTGGAAAATGTACATCTGGGCAGCTAATAACTATATTGGCAGCTGATGTTATGGATGTGTGTACAATTGTAATTGTGCCCATATATTGATCTGCTCAGAAATACTTGCTCAAACCACATGGCACCAGAGTCTGTGCCTGGTGTCTGTGAGAAAGTATATTTTTGACCGTTAAATATTTGACACATCTGGGCaacaaatcttattttatataacattgtGATGATATTTTGGGATTATGCTGATTTTTTCCCAGTCAGTGTCCCTCCACAGCCCCGATATCCTGTAGTTTAGTTTATGATATGgattttgtttctaatgtacttctgtatttgtatatatgttcaTGTTCTTTGTGTGTCACAACGCTGTCAATGTAGTCCTCTATCGACGGGTGCTTCACTGGTGTAGtagaattatatttttgctaaaAAGAACATCGTGTAAATAAACTAGTAAAGCAAGCAACACAT

Function


GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K10400 KIF15; kinesin family member 15

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154877 lncRNA upstream 99212 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 102132 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 264144 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 958947 15794408 ~ 15795149 (+) True G123388
TU154711 lncRNA upstream 1064133 15689601 ~ 15689963 (+) True G123386
TU154926 lncRNA downstream 22578 16792100 ~ 16792799 (+) True G123568
TU155013 lncRNA downstream 211271 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 322453 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 367891 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 926338 17695860 ~ 17760195 (+) True G123797
AMCG00002483 mRNA upstream 3500 16736684 ~ 16750596 (+) True AMCG00002483
AMCG00002482 mRNA upstream 102690 16621519 ~ 16651406 (+) True AMCG00002482
AMCG00002480 mRNA upstream 183669 16535647 ~ 16570427 (+) True AMCG00002480
AMCG00002479 mRNA upstream 294885 16343098 ~ 16459211 (+) True AMCG00002479
AMCG00002478 mRNA upstream 417377 16270456 ~ 16336719 (+) True AMCG00002478
AMCG00002485 mRNA downstream 180 16769702 ~ 16774759 (+) True AMCG00002485
AMCG00002489 mRNA downstream 10306 16779828 ~ 16790437 (+) True AMCG00002489
AMCG00002498 mRNA downstream 43939 16813461 ~ 16819588 (+) True AMCG00002498
AMCG00002497 mRNA downstream 52177 16821699 ~ 16824223 (+) True AMCG00002497
AMCG00002494 mRNA downstream 86985 16856507 ~ 16900912 (+) True AMCG00002494
TU154081 other upstream 3624399 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3692411 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4613631 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 4917927 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 5059931 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 188639 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 1145914 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 2062492 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2360881 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3504567 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile