RNA id: AMCG00002486


Basic Information

Item Value
RNA id AMCG00002486
length 459
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00002486
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16752548 ~ 16753496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAAGAAGAATCAAGTGTCTTGGGTAAAGCCCGCGGAGCCGTCCTTTCTCCGGAAATTTAAAAGCGATGTTGGCTACAAAGAGGGACCGACTATCGATACCAAGaggcAAGAGATGCCCACGGTGGATGATGACAGTGATGGCAGCGACAGAGACGATGAGAAACCTCAGGTGGTGGTTCTGAAGAAGGGTGACCTGACGGAGGAAGAGGTCCTGAAGATTAAGCAAGACGtcaaagatgatgatgatgAGGATGACGCCCCCGCAGATGGCAAGATCGTGTTCAGGAAGCCTCTGAAACGCTCCTCTGAGAAGTTCAAGGGCATCACTGCGAGCTCCagcaagaagaagaagcaggaggagaagaagacAGAGAGCCAGCAgaagaaagtgaaaaacaacagcTTGCTTTCTTTTggggatgaggaggaggaggaggaggaagaggaagggtAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154878 lncRNA downstream 97685 16653499 ~ 16654863 (-) True G123527
TU154874 lncRNA downstream 101094 16648407 ~ 16651454 (-) True G123524
TU154834 lncRNA downstream 269497 16481568 ~ 16483051 (-) True G123489
TU154833 lncRNA downstream 272255 16480029 ~ 16480293 (-) True G123488
TU154794 lncRNA downstream 625143 16124282 ~ 16127405 (-) True G123452
TU154999 lncRNA upstream 204666 16958162 ~ 16960107 (-) False AMCG00002503
TU155025 lncRNA upstream 227335 16980831 ~ 16982646 (-) True G123637
TU155030 lncRNA upstream 241633 16995129 ~ 17050056 (-) True G123642
TU155036 lncRNA upstream 321816 17075312 ~ 17075549 (-) True G123646
TU155101 lncRNA upstream 480874 17234370 ~ 17238544 (-) True G123705
AMCG00002488 mRNA downstream 18025 16689836 ~ 16734523 (-) True AMCG00002488
AMCG00002487 mRNA downstream 79969 16658898 ~ 16672579 (-) True AMCG00002487
AMCG00002481 mRNA downstream 169648 16568336 ~ 16582900 (-) True AMCG00002481
AMCG00002477 mRNA downstream 597983 16129440 ~ 16154565 (-) True AMCG00002477
AMCG00002475 mRNA downstream 707458 16038401 ~ 16045090 (-) True AMCG00002475
AMCG00002491 mRNA upstream 39060 16792556 ~ 16813272 (-) True AMCG00002491
AMCG00002490 mRNA upstream 70733 16824229 ~ 16831271 (-) True AMCG00002490
AMCG00002492 mRNA upstream 93928 16847424 ~ 16848116 (-) True AMCG00002492
AMCG00002503 mRNA upstream 204705 16958201 ~ 16974301 (-) True AMCG00002503
AMCG00002505 mRNA upstream 267923 17021419 ~ 17052806 (-) True AMCG00002505
TU154543 other downstream 1806237 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3098312 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3723142 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 3723142 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 4746197 11995828 ~ 12006351 (-) True AMCG00002368
TU154950 other upstream 82660 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 1168956 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6332498 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6428425 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7508069 24261565 ~ 24261823 (-) True G124829

Expression Profile