RNA id: AMCG00002489


Basic Information

Item Value
RNA id AMCG00002489
length 3037
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00002489
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16779828 ~ 16790437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGCTTGACGACTTGTTTCCTTCCCGGCAGCCATCTTGGATCCGGTCTCCGCTACGCCAACAtttggtaattaaaataatcgGTGGCTGCTCCACTAATGGAATCAGTGGTTcttcatatacattaattatatactgtgtgtgttatTGAAATGTCCCCGCACAGTGGTCCCGTTCTTCTGCTATAGTAGAACTCATTCATttacgttttttattttcataattaattccCGGATGTTGGCGTAGAGGAGAACGGATCCAAGATGGCTGCCGGGAAGACAACAGAGCACGTTTTTAGACGGAAAAGCCGTCTTTGCAAGGAGCAGACGCCATTTTGGAGAGAATATGTAACCTATACAATTAAGCTAGGTAAACATCAATCCAATCcaataaatttaaatacaagaaaaatatgttGAAGCGAAATGGAAATCCACCAGGCGGTAGTAGGAGTCGACGAAAAAGCACCCTGTTTGGCTATATGTTGTACTGGTCACCTCCCACCATGCTCCTGATTGGAATACACTCTTGGCATCTCTGAAATATGATTTGGCCGGTGTCCAAAAAGAGCAAGATAAAGGTGGTACAGATCAGCTTGCCTTCTACTGTTCTTTCACTTAAACCTCCCTGAAGTGTGCAAACATGAACCAGTCCGACTTGAAGGTTACTGGCATCGATTTCCTGAAGCAGCAGAATGAGGAGCTCCATCACACCTCTGAGTTTGTGACCCCCAGGCTGGTGGTGAGGCGAGGGCAGCCGTTCGTGGTCAGCCTGTCCCTGAGCAGAGCGCACAGCGCCGGGGACCAGCTGCACATCCACCTGTCTGTGGGCGCCCAGCCCCTGCAGTCCCAGGAGACGCTGGTGATCATTCCCGTGACGCAATCTGCAGTTGCGCAGGGCTGGAGCGCAAGAATAATCCAAACGTCCGGCCAAAAGTGTGAAGTGGAAGTGAGGACAGCCCCCAACGCTGCAGTGGGACAGTACTCCTTCAAGGTGAAGATTGGAGAAGACTACCTGTACAGCCCGGAGGACAGCAATATCTATGTGTTGTTTAACCCGTGGTGTGAAGGTGATGGGGTGTACCTGCCGGATGAGGAGGCGAGGAAGGAGTATGTTATTAATGACACTGGGTACATCTACGTTGGCTCGGCTAATGACATTACCGGGAAGCCATGGAACTTCGGCCAGTTTGAGGAGAACATGCTGGACTGCTGCCTGTTCCTCCTGGATAAGAAAGGCCTGAAGCAGGTTGCCAGGAAAGAGCCGGCGCGTGTGGCCAGGGCCATGGCTGCTGTGGTCAATGCCAATGATGAGAATGGGGTGCTGTGCGGAAACTGGTCTGGGGACTATTCAGATGGCACCCCCCCAGTCCACTGGACTGGGAGTTTGGCCATCCTGCAGGAGTACCACAAGTCAAGAAAGCCGGTCTGCTATGGCCAGTGCTGGGTGTTCTCTGGAGTCCTCACTACAGTGATGCGGTGCCTGGGAATCCCAACCAGAAGCGTGACCAACTTCTGCTCAGCCCACGACACTCAGGGCAACCTCACCATCGACATCTACCTCGACCAGCGCGGGCAGAGACTTGACATCACTACCGATTCCATCTGGAATTTCCATGTGTGGAATGATGTGTGGATGAAGAGACCGGACCTACCTGAGGGATATGATGGCTGGCAGGCACTGGATGCCACTCCACAGGAGAAGAGCGAGGGTGTCCATCAGTGCGGCCCTTCAGCTCTCAAAGCCATAAAGAATGGAGAGGTCTACCTGGCCCATGACACCAAGTTCGTTTTTGCGGAAGTCAACGCTGACAGGATCATCTGGCTGGTGAAGGACCCAGTGCGTGAGCCTGAGAAGATGATCAGGCTGAGAGAGCATCGCAGTGCTGTTGGCAAGAATATCAGCACCAAGGCCGTGGGCAAGGACATGCGCCAGGACATCACCATGGAGTACAAGTTTGCAGAGGGTACCCCTGAGGAGAGAAAAGCCGTAGAAAGAGCCCTTGCCGTCTCTCGCCCTGATGTTCCTTTCCCGACAACCCCGACTGTCCAGGTTGGCTTCGAGTCTCGGAACGCCGTCCGTCTGGGCACTCCGGTCACTCTCTGCATCTCCCTCAGCAACTCCTCTTCTCGGGACCAGACCATATCCCTCACAGCTTCCTGCCAGCTACAAACCTATGATGGCAAGAATGTGGCCACCATCAAGGTGCTGAAGCAAGAGGTGACAGTCCAGGCCAAGAGCTCTACGGCTGTGCCCATCGAGGTGGAGGCTGCCGAGTACCTGCAGCACCTGTCTGTGGTCAACGATGACCTGTTAGTGCGCGTCACCGCCGTGAGCAAGACCAAGGAATCCAGCTCCATCTCTGTGGACGACGCCACCCTTGCCTTCAAATACCCACCCATCACTGTGGATATGCCGGAAACTGCCAAGATTGGGGAGCCGTTCACTTGCACCTATACCTTTAAGAATGATATTGGTATTGCAATGGACAACTGCAAGCTGCATGTGGAAGGACTGGGCCTTTTCCGACATGAAACCTTTAACGAgggGAACATCAGAGCGGGTGGGATCTTCAGGTCAAAAGTGATCTGCACACCGACCAGAAGTGGGGAGCGGAAGATTATCGCCAAGATCACCTCCGATCAGATCAATGGGATCAATGCAGAGAAATCTATCGTGATCAGCTAAACTGCCACTGGAGAGCTGAGGCACTGAGCAGCAATAGGTACTGGACAAGGAGAAGGACAGCTTTATCTAATCATCTTTCGCTAACTTTACAGATTATATCATGGGCTTATGACAGAAATCTAAGTTTAAAGTGAGGGTAGCAGGTAAGCATGTATATCCCTACAGTACTGGTGTTAgatttcccccaaaataatagctactgttaaaaatgtgaattaatcaATCATAGCTCCCTGTAGTCTACACTAGACTGAATTAAACGTAAGTGGGATTGCTTTGGTGTCAACATACAGTAGAAGCAGATGCTTTGGGAGAAAGGAATACATAAGGTAACCAATTGGGTCAGTC

Function

GO: NA

KEGG:

id description
K05621 TGM4; transglutaminase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154877 lncRNA upstream 124944 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 127864 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 289876 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 984679 15794408 ~ 15795149 (+) True G123388
TU154711 lncRNA upstream 1089865 15689601 ~ 15689963 (+) True G123386
TU154926 lncRNA downstream 1663 16792100 ~ 16792799 (+) True G123568
TU155013 lncRNA downstream 190356 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 301538 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 346976 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 905423 17695860 ~ 17760195 (+) True G123797
AMCG00002485 mRNA upstream 5069 16769702 ~ 16774759 (+) True AMCG00002485
AMCG00002484 mRNA upstream 10306 16754096 ~ 16769522 (+) True AMCG00002484
AMCG00002483 mRNA upstream 29232 16736684 ~ 16750596 (+) True AMCG00002483
AMCG00002482 mRNA upstream 128422 16621519 ~ 16651406 (+) True AMCG00002482
AMCG00002480 mRNA upstream 209401 16535647 ~ 16570427 (+) True AMCG00002480
AMCG00002498 mRNA downstream 23024 16813461 ~ 16819588 (+) True AMCG00002498
AMCG00002497 mRNA downstream 31262 16821699 ~ 16824223 (+) True AMCG00002497
AMCG00002494 mRNA downstream 66070 16856507 ~ 16900912 (+) True AMCG00002494
AMCG00002493 mRNA downstream 116308 16906745 ~ 16914952 (+) True AMCG00002493
AMCG00002499 mRNA downstream 134880 16925317 ~ 16933518 (+) True AMCG00002499
TU154081 other upstream 3650131 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3718143 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4639363 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 4943659 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 5085663 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 167724 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 1124999 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 2041577 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2339966 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3483652 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile