RNA id: AMCG00002494


Basic Information

Item Value
RNA id AMCG00002494
length 3461
RNA type mRNA
GC content 0.54
exon number 21
gene id AMCG00002494
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16856507 ~ 16900912 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGCCCATTTAATCGGAATGAGTTTGTGGTGTGTTTACATGTCACGAAATTTCACGGATTCACACAGCGATATTTTATTAACCTaacttattttgatttaaaacgATTGCATTTATgatatgaaaatggaaaaataaatatagagatGGATTTAAAGCCGAACTCCAACAAAAAGACCCCTGCATTGAGTATATAGTATCAAAGTAAAGTGGGCGCCAAGGCTATGTGGGGTACTCTGTGCCAGAAAAGGTTGCCCTCCCTGGGTTTGGGCAGGCTGGGCACGGTCTCCCTGGGGTATGGACCAGCTGGCACCAGGCGAACCACCAGCATCAGGACCATCTACAGCGAGACgggggagtgggagagggacTACAGGGCAGAGACACGGCGCAGAGTGGAGACCTGGTGGCACCCCCGCATTAAAGAGCAGTGGCGCAGAGATGCACAGGACAAGAGCTCCCGGCAGAAGTTCTACGTGCTGTCCATGTTCCCATACCCCTCTGGGAAGCTGCATATGGGCCACGTGCGAGTGTATACCATCAGTGACGCTATTGGCCACTTCCAGAGGATGAGGGGAAAACAGGTCCTGAATCCAATGGGATGGGATGCCTTTGGACTCCCAGCGGAGAATGCTGCTATAGAGAGAGGCCTGGACCCCGAGGAGTGGACCAAAAGtaaTATTGAGCACATGAGGGAGCAGCTTAACAGTCTTGGTCTCTGCTTTAACTGGGACAGGGAAGTGACAACCTGCCGGCCAGACTACTTTAAGTGGACTCAGTACCTGTTTGTCAAGATGTATGAAGCAGGACTGGCATACCAGAAAGAGGCTGTGGTCAACTGGGACCCTGTGGACCAGACGGTGCTGGCAGACGAGCAGGTGGATGAACATGGCCTCTCCTGGCGCTCAGGTGCTAAAGTGGAGCAGAAGTTGCTGAAGCAATGGTTCATCAAGACAACCAACTATGCAAAGTCACTCCTGGACGCACTGGCGGAGCTACCCGAGTGGTACGGTGTCAAAGGCATGCAGGCTAACTGGATTGGAGATTGCACTGGATGCTATTTCGACTTCCACTTAAAGGTGAACGGAGAGGAGACGGGCGAGAAGCTGTCTGCGTACACCTCCACTCCCGAGGCCGTGTACGGAGCCGCCTACCTGTCCATCCTGCCCTCTCACCGCCTGCTGCATGGCTCCAGCCCCGCCACCCCGGCCCTGCAGAAGGCCTTTGAGGCTGGGAAAGATTGCCTGACCTCAGTCAGCGCTGTATGTTTGTTCACCGGCGAGGAGGTCCCTCTCGTCATCTCAGCGAAGCCAGAGTTCGAAGGTCACTTGGATACTGTCATAGGTATTCCTGACACCAGTGTGGAGGAGGCAGCGGTGGTCAAGACTCTGGGACTGAAGGCCTTCACTGTGCTGCACACACAGCCTGATGGGTCTGAGACTCTCCACAGCTCAGCAGAGTTCACAGGCCTCCCCAGACAGAAGGCCTTTGACATGATAACCCAGAGGGCCAGAGAGATGAAGGTGGGTGGCCACCTCACCAGCCCCAAGCTCCGGGATTGGCTGATCTCCCGTCAGCGGTACTGGGGCACCCCTATACCCATCATCCATTGCCCGTCGTGTGGTCCATTGTCTGTGCCTGTGGAGCAGCTCCCTGTCGTGTTACCCAAACTTCCCTCCCTCACGGGCAAGGGGGCATCTCCTCTGGCAGCAGCGGCCCACTGGACTCACTGCCACTGTCCCCAGGAAACAGACACCATGGATACGTTTGTGGACTCTGCCTGGTACTACTTCAGGTACACAGACCCCAACAACACACAGAGGCCGTTTGATCGGTCCCTGGCAGATTACTGGATGCCTGTCGATCTGTACATCGGAGGCAAGGAGCACGCCGTCATGCACTTGTATTACGCCAGGTTCCTCAGCCACTTCTGCAAAGATCAGAACATGACCTCTCACAGGGAGCCGTTCCGCAAGCTGCTGGTTCAGGGCCTCATCAAAGCGCAGACCTTTCGCTTGGCCGACGGCGGCCAGTACCTCAGGAGAGAAAACATCGACTTCTCAGGCTCAGAGCCCGTGCAGGCCGGCAGCCTAAAACAGCTGCAGGTGACCTGGGAGAAAATGAGCAAGTCCAAACACAATGGCCTGGACCCCCAGGAAGTGGTGGAGCAGTACGGCATCGACACTGTGCGCCTCTACATCCTGTATGCTGCCCCCCCCGAGCAGGACATTCTCTGGGATGTCAAGACGGACGCTATACCCGGGGTCCTGCGCTGGCAGGCTCGCCTCTGGGCGCTGGTAACCAGGCTGAGAGAGGCACGCCAGGCCGGGGGAGCCCCAGACCCACAGCAACTGAGTCCCAAGGAGAAGGGGGAGGCCAGGAAGATCTGGGAGAACAAGAACTATGCCGTGTCTCAGGTGACAGCCCACTTCACCGAGGACTTCCTGCTCAATGCGGCCATCTCCCGCCTCATGGGTCTGACCAACACTCTCTCTCAAGCCTCCTCGCGTGTGGTTCAACACAGTGTGGAGTTTGAGGAGGCCCTGTCCACGCTATGCGTCATGACTGCACCCCTGGCTCCACACCTGGCCTCCGAGCTCTGGGCAGGTCTGTCCCAGGTGAGCAGCAGGCCGGCCGTTGGCTCGCAGTGCGGCACGGAGGTGCTGCAGCAGCCGTGGCCCAGAGTGGACCCGGAGTACCTTCACACCCCCGACAATGTGGACATCGCTGTCAGGATCAACAACAAAGTGTGTGGTACTGTCAGTGTGCCCAGGGAGGTGGCCCGGGACGCAGAGAAAGTGCAAGAGCTCGTTCTCAGGAGTCAAGTGGGCATGCAGCACCTAGCCAATCGCACCATCAAGAAAGCCATCCTGTCACCCAGAACCGCCCTTATCAACTTTCTAGTGGAGCACTGATGACAGAACACCCTGCTGAGGGGTGGAGCCAGCTGTCAGTCATCAGGCTAATGGAAACATCTCATCAGGGCTTTGGTGAGCGATGAAAAAAGGAAGATTCTGGGGCTATATTGGAGAGATGTTCTCCAAACCTTAAATATTTGGCCTTGGTTgtccttatttatgttttttattggttatatatatgtatgtatgtatatatatatatgtatatatggttTAACTCACAAGCCAAAGGAACGAGGAGTGTGTTATTGCACACAGGACCCAAGATAAGGACAGCATCTCGGTCTGAGCATCTCTGGTGCAGATCTCACTGTGCGAACTGTGGCCTTGCGGTGATGACCCACATTTTGATAGTGCTGTGTCTTCATTTCCCTTGATGTCTGTCCTGTATCTGAATACCATTTTAAGTATAAAGGACACCATCCGTGAGACATTCAGAATGTTAATTTCAATCATGAATGCCTTTTTCTTTGTCACATGTTGAGATTTGTTCTATTTTGTATGATGTTAAAGACTTAGTCTATATCAAATAAAACCGC

Function

GO:

id name namespace
GO:0006429 leucyl-tRNA aminoacylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004823 leucine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG:

id description
K01869 LARS, leuS; leucyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154926 lncRNA upstream 63708 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 201623 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 204543 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 366555 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 1061358 15794408 ~ 15795149 (+) True G123388
TU155013 lncRNA downstream 79881 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 191063 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 236501 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 794948 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 1025787 17926699 ~ 17940633 (+) True G123808
AMCG00002497 mRNA upstream 32284 16821699 ~ 16824223 (+) True AMCG00002497
AMCG00002498 mRNA upstream 36919 16813461 ~ 16819588 (+) True AMCG00002498
AMCG00002489 mRNA upstream 66070 16779828 ~ 16790437 (+) True AMCG00002489
AMCG00002485 mRNA upstream 81748 16769702 ~ 16774759 (+) True AMCG00002485
AMCG00002484 mRNA upstream 86985 16754096 ~ 16769522 (+) True AMCG00002484
AMCG00002493 mRNA downstream 5833 16906745 ~ 16914952 (+) True AMCG00002493
AMCG00002499 mRNA downstream 24405 16925317 ~ 16933518 (+) True AMCG00002499
AMCG00002495 mRNA downstream 36449 16937361 ~ 16956570 (+) True AMCG00002495
AMCG00002500 mRNA downstream 57331 16958243 ~ 16959969 (+) False AMCG00002500
AMCG00002496 mRNA downstream 75376 16976288 ~ 16985906 (+) True AMCG00002496
TU154081 other upstream 3726810 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3794822 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4716042 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5020338 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 5162342 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 57249 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 1014524 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1931102 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2229491 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3373177 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile