RNA id: AMCG00002497


Basic Information

Item Value
RNA id AMCG00002497
length 1414
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00002497
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16821699 ~ 16824223 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGATTTTGCTCACCTTACCACGCTCGGTTATCCCTTGCTTGTGATCTGGCTTAGCGTGTCAAGTGCAGTCTGGCACAGTGTCCAGATAAAACAGCTTCTTGGACTCCCTTGAACTGGATGGATTTATTGAGCAGAAGTTTTTGATTACAGTGTTTTTCCACATTCAGGGATAGAAAGAGAAGATAAATTAGAGAGCTCTGCCCCTGCGCTGCGCATTTCCAGGTCTAGCCATGGCGTTCACAGGAGTACGCGTGCTGCTCTGCCTCCTCTGCGTTGTTCATGCCTCGCTGCAGCAGCAGAGCCCCCCCAAGAAAAAACCTGCGAAGAAAGATGCAACTAGCTCTGCAGCCATCGATGAGATCAAGCAGCAGATTGAGGATATCCTGCAGGAGTTGAGTCTCCTGAAGGAACAGCAGGCCTTACAGACTGTGTGCCTGAAGGGAACCAAAATCCACGGCAAGTGCTTCCTGGCAGTGAACGAGAAGAAAAGTTATCACACGGCCAACGACGACTGCATCTCCAAGGGCGGCACGCTGAGCACGCCCCTCAACGGCGACGAGAACGACTCGCTCTACGACTACATGAGGAAGAGCATCGGCCAGGAGGCCCAGGTCTGGCTGGGCATCAACGACATGATGAGTGAGGGCTCCTGGAAAGACGTGACGGGAACCAACATCAAGTTCAAGAACTGGGAGACCGAAATCACCACCCAGCCCGACGGCAACCGCTCCCAGAACTGCGCCGTCCTCTCGGGCACTGCCAACGGGAAGTGGTTTGACGAGAACTGCCGCGCGGAGAAGCCCTTCATCTGCGAGTTCAACATTGTCTGAGTGTCCTCTCTGCGTCTTCCCCCTTCTAAAGGCACATGTATTGGGTTGatctgtttttgttgattttgtctTTTGAATTCTGGTGAATCCTCTCACTATTAAACCGCTGGTCAAAATGGTGATACAGATTGCACATTTCTATTCTGTTTCTTTAACAAACAATCAAATTCTTAAAATGCGTCTGTAAATACCATTAACATCTAGTAATGTTTTTCcccttgaaaataatattttgagtTGGATGAAGATGGCTGATATTACAGCACAtctaatacatatacaataaacatGGTTGCAACAATGTGCTGAAAATATGCCAAAGAGGATTAATAATGTAAGATTGTAAGAAAACTTATTTATGCCCTTCAGTAAGAACTTGCTTTAAAACAgatttctatttatattttgcattctctgtatttttcattttcctcatTTGTGgtgaaattaatatatacaagGTTAATTTCAGCAAGCTAGTCGCTGccggtttatttttgtaaccaaAAATGTCTAGCCTGATATAACCAAAAGCCAGAATATTAATCtgttaaattacttaataaatTTGTTAGAAAATGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K17520 CLEC3B; C-type lectin domain family 3 member B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154926 lncRNA upstream 28900 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 166815 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 169735 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 331747 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 1026550 15794408 ~ 15795149 (+) True G123388
TU155013 lncRNA downstream 156570 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 267752 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 313190 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 871637 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 1102476 17926699 ~ 17940633 (+) True G123808
AMCG00002498 mRNA upstream 2111 16813461 ~ 16819588 (+) True AMCG00002498
AMCG00002489 mRNA upstream 31262 16779828 ~ 16790437 (+) True AMCG00002489
AMCG00002485 mRNA upstream 46940 16769702 ~ 16774759 (+) True AMCG00002485
AMCG00002484 mRNA upstream 52177 16754096 ~ 16769522 (+) True AMCG00002484
AMCG00002483 mRNA upstream 71103 16736684 ~ 16750596 (+) True AMCG00002483
AMCG00002494 mRNA downstream 32284 16856507 ~ 16900912 (+) True AMCG00002494
AMCG00002493 mRNA downstream 82522 16906745 ~ 16914952 (+) True AMCG00002493
AMCG00002499 mRNA downstream 101094 16925317 ~ 16933518 (+) True AMCG00002499
AMCG00002495 mRNA downstream 113138 16937361 ~ 16956570 (+) True AMCG00002495
AMCG00002500 mRNA downstream 134020 16958243 ~ 16959969 (+) False AMCG00002500
TU154081 other upstream 3692002 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3760014 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4681234 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 4985530 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 5127534 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 133938 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 1091213 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 2007791 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2306180 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3449866 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile