Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00002498 |
| length | 1074 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 8 |
| gene id | AMCG00002498 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 16813461 ~ 16819588 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0090305 | nucleic acid phosphodiester bond hydrolysis | biological_process |
| GO:0004527 | exonuclease activity | molecular_function |
| id | description |
|---|---|
| K12589 | RRP42, EXOSC7; exosome complex component RRP42 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU154926 | lncRNA | upstream | 20662 | 16792100 ~ 16792799 (+) | True | G123568 |
| TU154877 | lncRNA | upstream | 158577 | 16653499 ~ 16654884 (+) | True | G123526 |
| TU154876 | lncRNA | upstream | 161497 | 16651542 ~ 16651964 (+) | True | G123525 |
| TU154813 | lncRNA | upstream | 323509 | 16485826 ~ 16489952 (+) | True | G123468 |
| TU154713 | lncRNA | upstream | 1018312 | 15794408 ~ 15795149 (+) | True | G123388 |
| TU155013 | lncRNA | downstream | 161205 | 16980793 ~ 16985904 (+) | False | AMCG00002496 |
| TU155044 | lncRNA | downstream | 272387 | 17091975 ~ 17148336 (+) | True | G123653 |
| TU155050 | lncRNA | downstream | 317825 | 17137413 ~ 17141435 (+) | True | G123659 |
| TU155212 | lncRNA | downstream | 876272 | 17695860 ~ 17760195 (+) | True | G123797 |
| TU155224 | lncRNA | downstream | 1107111 | 17926699 ~ 17940633 (+) | True | G123808 |
| AMCG00002489 | mRNA | upstream | 23024 | 16779828 ~ 16790437 (+) | True | AMCG00002489 |
| AMCG00002485 | mRNA | upstream | 38702 | 16769702 ~ 16774759 (+) | True | AMCG00002485 |
| AMCG00002484 | mRNA | upstream | 43939 | 16754096 ~ 16769522 (+) | True | AMCG00002484 |
| AMCG00002483 | mRNA | upstream | 62865 | 16736684 ~ 16750596 (+) | True | AMCG00002483 |
| AMCG00002482 | mRNA | upstream | 162055 | 16621519 ~ 16651406 (+) | True | AMCG00002482 |
| AMCG00002497 | mRNA | downstream | 2111 | 16821699 ~ 16824223 (+) | True | AMCG00002497 |
| AMCG00002494 | mRNA | downstream | 36919 | 16856507 ~ 16900912 (+) | True | AMCG00002494 |
| AMCG00002493 | mRNA | downstream | 87157 | 16906745 ~ 16914952 (+) | True | AMCG00002493 |
| AMCG00002499 | mRNA | downstream | 105729 | 16925317 ~ 16933518 (+) | True | AMCG00002499 |
| AMCG00002495 | mRNA | downstream | 117773 | 16937361 ~ 16956570 (+) | True | AMCG00002495 |
| TU154081 | other | upstream | 3683764 | 13125378 ~ 13129697 (+) | True | AMCG00002393 |
| TU154058 | other | upstream | 3751776 | 13058073 ~ 13061685 (+) | False | AMCG00002388 |
| TU153909 | other | upstream | 4672996 | 12133786 ~ 12140465 (+) | True | G122746 |
| TU153704 | other | upstream | 4977292 | 11835439 ~ 11836169 (+) | True | G122582 |
| TU153608 | other | upstream | 5119296 | 11688600 ~ 11694165 (+) | True | AMCG00002331 |
| TU154987 | other | downstream | 138573 | 16958161 ~ 16960082 (+) | True | AMCG00002500 |
| TU155222 | other | downstream | 1095848 | 17915436 ~ 17984730 (+) | True | G123807 |
| TU155458 | other | downstream | 2012426 | 18832014 ~ 18838531 (+) | True | G123989 |
| TU155541 | other | downstream | 2310815 | 19130403 ~ 19132358 (+) | False | AMCG00002561 |
| TU155679 | other | downstream | 3454501 | 20274089 ~ 20276255 (+) | True | AMCG00002573 |
