RNA id: AMCG00002499


Basic Information

Item Value
RNA id AMCG00002499
length 2115
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00002499
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16925317 ~ 16933518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAGACTCAGAGGGAAGGCTTTTTACTATGTCTGTGGGAAGGTGTTCTGTGAGGAAGACTTCCTGTACTCGGGTTTCCAGCAATCAGCGGACAAGTGCAATGTTTGTGGCCACCTCATAATGGACATGATTCTTCAGGCTCTGGGTAAATCCTACCACCCGGGCTGTTTCCGCTGTGTTATATGCAATGAGGGTCTGGACGGCGTGCCCTTCACCGTGGACACTGAGAACAAGATCTACTGTGTCCGGGATTACCACAAAGTTCTGGCTCCAAAATGCGCTGCCTGTGGTCAGCCCATCCTGCCCTCTGAGGGCTCTGACGAGACCATCCGAGTGGTGTCCATGGACAAGGACTATCATGTGGAGTGCTATCACTGTGAGGACTGCCAGATGGAGCTGAACGACGAAGAGGGCCATCGGTGCTACCCTCTGGACGGCCACCTGCTGTGCCACTCCTGCCACCTGAAGCACATCGACGCCGGCTCCCCGGCCTCGCCCGTATTCCAGCACCAGTTCTAGAAACCCGGGGGGTCGCTCTCTACACAACAGCCGTCCCTGCCCGGATACTGCCGAAGCCACCAGACTGTGTTTTGCTCCGGACGTTCTTCCAtagagaatattttttttttacaataccTCACAATAGCATCCCTTCAACTGGGCAACGGGTAGAGGCGCATGCGGGGGGCAGAGAACCATTTTtaagtgtatgtttttttatgtttgtaggAGAAATGGTAGTATAAGATGTATATGACACAACATGTCTGTTTTAAAGCAggactttaaaaataacaatacttattttactttttcatgaGAATTCTGCATGGGAAAGGAGTGCTATGTTTTGTATTCTGATTTTAGTTTGAAACCCTCGTTGTGGGAGGCGTTGTCGTGTCAAGGTGCTCACCCTGGCCTCAGTGAAGCGGTGCGTTCAGCAGCATGGAAAGGTCGCTCGTGTGGTTGTGTTCCCAGTGCCTTTACAAGAAGCAGTGCGAAGGATCAAGTCACGCGGTGTCCTACCAGATAGTGTTGAGAATGGCAACTTAATCTCGAACGACTGCTTTGAGGATGAAGACATGGGCCGTTGTCTTGTCAGCTCATGATTTGTCCTGACTTCACGTTCAGGGGTTTAGGAGTTGAAACACACAGACTGCCACCGAtctgaggaatgtgaaaatcaACTTTTCTTACCTGGTACAGTCGGCTCCgtgatttgtttgtctttttttttcgtCTGGGGAGGCGTTTTCCCCTCTCAGACCTGATTGATGatgttatatgtatttaatttgatttcttgcctttttttttgtttggaaaaagaaaatctgaattGCTTCTGTTAGTGTATGTAGTGCCTTTCTCACAAAGTTTCAATGTCAGGAGATGAGTGTGTGACAGGTTTGTGAGGACCCTGAATGTTGGGTCACAGTTCTTCATCTCTGGGTTACGAAGGCTTCAATCTATTTGATTAAGTGgataattattacaataatgttATTAAGACCCACTGAATGTCAAGGGCTGAAGATCAGGAATCCTTCAAGGAGTTCAACTAGAGAGTGTCTGTTGGAGTTGCGTGCTAATATCGAGTCAAAGGTTTGTGCTTATTTTAACTagctctgtatttatttcagtaacGGATACAATTGTGTGAACAGCTTTGTTATCGATGTTTAAAATGCTCAAATTCGCCTGGCATACTGCCCAAATACTGTTCTCCTTGGTGTTTTTCcactgcatacatttattttcttttgccaaatgtattaaaaaaaggttaatataCTATTTAACCCGCTGCTAACTAATTTTCATTTGATTCAAGGGGTTATTCAGTTCACTAAGATATTCTGAGGAAAAGACAGATCAAGAAAGTATGACTGTATCATTTATTATCTTCTAACCAGTTACAGCTTTCATTGtattgtgcaaatgttttattttgtttctcataaactgtatttaaatctCATCACAACAAGAAATTGATTTGTCATTATTTGTAAAGTTCCTGCCATTTACAATACTGACACTTTAGTGGATGTTTTTCCTACGTGTAAGACATATCAAACCCATCTAAATAAAGGCCATCCTTTCTTGTTAAGA

Function

GO: NA

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154926 lncRNA upstream 132518 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 270433 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 273353 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 435365 16485826 ~ 16489952 (+) True G123468
TU154713 lncRNA upstream 1130168 15794408 ~ 15795149 (+) True G123388
TU155013 lncRNA downstream 47275 16980793 ~ 16985904 (+) False AMCG00002496
TU155044 lncRNA downstream 158457 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA downstream 203895 17137413 ~ 17141435 (+) True G123659
TU155212 lncRNA downstream 762342 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 993181 17926699 ~ 17940633 (+) True G123808
AMCG00002493 mRNA upstream 10365 16906745 ~ 16914952 (+) True AMCG00002493
AMCG00002494 mRNA upstream 24405 16856507 ~ 16900912 (+) True AMCG00002494
AMCG00002497 mRNA upstream 101094 16821699 ~ 16824223 (+) True AMCG00002497
AMCG00002498 mRNA upstream 105729 16813461 ~ 16819588 (+) True AMCG00002498
AMCG00002489 mRNA upstream 134880 16779828 ~ 16790437 (+) True AMCG00002489
AMCG00002495 mRNA downstream 3843 16937361 ~ 16956570 (+) True AMCG00002495
AMCG00002500 mRNA downstream 24725 16958243 ~ 16959969 (+) False AMCG00002500
AMCG00002496 mRNA downstream 42770 16976288 ~ 16985906 (+) True AMCG00002496
AMCG00002502 mRNA downstream 53584 16987102 ~ 16992955 (+) True AMCG00002502
AMCG00002501 mRNA downstream 69530 17003048 ~ 17016246 (+) True AMCG00002501
TU154081 other upstream 3795620 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3863632 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4784852 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5089148 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 5231152 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 24643 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 981918 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1898496 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2196885 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3340571 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile